Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2834g00016 ATGGATGCGGAGGATGAGGAAGCTCCACAAACTAAACCTTCTCTTCCATTCCAACCACACCCTGATCCTGATGCTGATGCTGATGCCGATGCACCTGTTGACCTCTCAACCACCGTGTCACAATGCGATACCGGCCTGCAAAATTTTACCAACTCCGGTGGAGGAGACGTGCCGCCGGCTCCTGTTCACGGCGGAGATGCCGAGGTTGTGATCACGGGGAAGTCGAGTGAAGCCGACGCGGTGGTGGTTTCAACCGATGAGATAAAGGAGACGGTGATGGTGGTGGCCGATGGGGGCAGCGAAGTGCAAGTGATGGACGTAGCGGGTAATGAGATAGTTGAGGATAGGGATAGCGTAGGGATGGATGATTCGGAGAAGAGAAATGCCTCTGGCTCATGTGTGGTTGGTGTGGAAGATGAAATTGTGGAGGGGAAAGGGAATGAAGGAACCGATGTGGATGACATGGTTTTGGAGACTGGGAAGGTGGAAGAGGAAGCCAATTTGACAATTGGGGAGAACGAGGACGATGGGGAGACAAATGAAGTTGCTTTGACGGAAGGAAAAAAAGAACAACAACAAGAAGAAGAGGAAGAGGAGAAACAACATCAACCAGAAGCTGAAGCTGATGCTGATGCTGTTGGTAGTATGGCAGAAGATACAGAGGATGCTGAGGAGACAAATGAAGCTGCTTTGATGGAAGAAGAAGAAGAAGAGCAAGAGCAAGAACAACAACGAGAGCGACAAGAAGCTGAAGGTGAAGGTGATGCTGTTGGTGGTTTGGCAAATGATAAAGAGGATGCTGAAGAAACAAATGAAGCTGCTTTGATGAAAGAAGAAGAAGAAGAAGAGGAAGAACAACAACAGCGACAAGAAGTTGATGCTGATGCTGATGATGGTATGGCAGAAGAAGATACAGAGGCTGCCGAGGAGATAGAGGTGACGGAGGAGCAGAGTACGAGTGTCAGTGGTGGGAAGAGGAAGCGTGGGGCTGGGAAGAATGCTAAGTCTGCAGGGAGAGTTCCATCCAAAAAAAAGATGGAGGAGGACGTTTGTTTCATTTGCTTTGACGGGGGTGACCTTGTGCTTTGTGACCGCAGGGGATGCCCCAAGGCTTACCATCCTTCATGCGTCAATCGTGATGAGGCCTTCTTTCGAGCCAAGGGAAGGTGGAATTGTGGTTGGCATCTTTGCAGCATCTGTGAGAAGAATGCATACTATATGTGCTATACATGTACGTTCTCTTTGTGCAAGGGATGCATCAAAGATGCTGTTATCTTATGTGTTCGAGGAAACAAGGGATTTTGTGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGAGCAGGGAAACAACATGGGACAAGTGGATTTTGATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTTAAAGGAAAGCTATCTCTAACATTTGAAGAACTCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATGTGCTTCCTTCTAAAGAGGAATCACCAGATGAACTTTTTGAAGGCAATAATGATAGGGGATCAGATTCAGATAGATCCTATGAGAATGTAGATTTGAGTCGTCCTACAAGAAGAAAGGCCAAGAAACGGGCAAAAATGCGTTCCAAAGAAGGGAGTTCATATAGTGCAGTGACGGTGCTTGGTGCCGATGGGCCATCTGCAGATGGCAGCTTTGAGTGGGCTTCAAAAGAGCTTTTAGAGTTTGTTATGCACATGAGGAATGAAGACAAATCTGTTTTGTCTCAGTTTGATGTGCAGGCTCTTTTGCTAGAGTATATTAAAAGAAATAAACTTCGAGATCCTCGCCGAAAAAGTCAAATCATTTGTGATGCAAGGCTCCAAAATTTGTTTGGTAAACCAAGAGTGGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTCTGAAAGATGACTCTCAGGCTGAAGACCTACAGGGTAGTGTTGTTGATACTGAAGTGAGTCATTTGGAAGGTGATGGAAATGCCGATTCATTTCTAAAAGCTGGCAAAGATAGGAGACGTAAAACTCGTAAGAAGGGTGATGAGAGAGGACTTCAATCTAATGTTGATGATTATGCAGCCATTGATAATCACAATATTAATTTAATTTATCTACGACGTAATTTGGTGGAAGATATACTTGAGGATATGGAAAAGTTTCATGATAAAGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGACAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGCACATGCAAAGCAGCAGAGCCGTATAAAGTTGGTAAAAGAATGGCAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGCCAAAGCATAAAGTGTGGTCTCATAAATCGGCTGACTGTGGGTGACATTCAGGACAAAGCATTGGCGCTTCAGGCAGTTAGAGTGAAAGATTGGCTAGAAACAGAGATAATGCGGCTGAGTCATCTTCGTGATAGAGCTAGTGAGAAAGGTCGCAGAAAAGAGCTAAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACACCTGAAGAACGTCAGCGTAGATTGGAGGAAATTCCCGAAATACATGTGGATCCAAACATGGATCCAAGTTATGAGTCTGAAGAAGATGAAGAAGAAATGGATAATAAAAGACAAGAAAATTACATGAGACCTAGAGGATCTGCCGCATTTGGAAGGAGGGGGATGGAAATTGTTTCTCCTAGAAGTGGTTCTATTTCAAGTGATTCTTGGACTGGAACAAGGAATTATTCTAATGTGAACAGAGAGCTCAGCAGAAATTTGTCTAGTAAGGGTTTTTCACTCAAAGGCGATGATGTTTCTAATGCTAGCGAGGCATTAAATGATGCTCAATTGCATCAGGGAAGAGATAGGGAATCACAACTATCAAATAGCTGGGAGAGGCAAAAGCTATCTTCAAGCTTCGAAAGTGGTGCTAAAAGTAGCCAACCATTGGTAACATCTGAGTCTTTTTCTACTGCTGTGCTAGAAGCTTCTGCAACACCATCTTGTGCTGGAATAGCTCCCCCAGCGGTGAAAATTAACGAAACTGAAAAGATGTGGCATTATAAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCATGGTGCAGCTACGCAAATGGAGTAACACAGGATACTTTCCTGCTGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGAATCTATACTCTTAACAGATGCCTTAGCAGGGAAAGTTTCTAAGGAACCACCAATGGTGGGTGAAACTCTTCCTAAGGCTCAAACGGTGCATTTGGCTGCTCAAAAAGGCATAGAAGGTCAAGTTGGAGGAAGATCAACATTTGATCAAAATAGTGGATCTTGGAATTTAAATAGTACTCTGGGTTCTCCTGGACAAACCACAGGAGGAATTTGGAGATCTAAAGATAATATTAATTCTGTAGCAAATAGACCCTCTCCTTTGGCAGTTGAGGTCCCCAAGAATCCTGCAAATGGTTGGGGTTCTGATGCCGGTGTTAGAAATGAATCAACAAATCTTCCTTCGCCTACTCCCCAGCCTACTTCAGGTGCGACTAAGGGCCAGGCTTTTGAAAATACATGGTCTCCAACCCCTGTCCAGTTGGCTGGGTCTCTCTTACGAAATTCATTCCCAGGCGGTCCTGGAGGTTTGCAGGCCTCTGGGGTAGTGCTCCCAGAGAATGTTGTACAAAATACTGAAAATGGTTCAAGTTCACAAGCTGGTATGACTTCAGCTTCTAAATCAGAGAAGGGTATGATATTGAGCTCCACAGATACTCAAGTGCATCCTCAAGCAACAACAGCGGCACCTGTTCTGACTTCAGGTGTTGACATTAAAATGGCAGGTGTCCAAAACCAAGTTGTGAGTAGCCATAACTCTCGTATTGAAGCTCAAGGGTGGGGTTCTGGTTTGGTTCAAAAGCCAGAACAACAGGCCTGGGGAGGTACCCCATCTCAATGGATAGAACCAAATAATCCTGCTACTATGCCTGTCCGGCCCGCTTCCCATGGCCTTTGGGGTGATGCTTCGTCTATCCAGAACTCTACCTCATTTAGCACTGGAAATCCAACTGGGAGTTTACCCACGCCTGGCTTTGTGGGTATGACTACACCTGAGCCTTGGAGACCACCAACTTCAAGTAATCAATCAAACATTACAGCTCCGGCTCCAGCTCCGCCCAATATACCTTGGGGCATGGGCCTGCCAGGAAATCAGAATATTAACTGGGGTAGTGGGGCTTTTCCTGCCAATATGAACATGAACATGAGCTGGATGCCTGCGCAGGTGGCAGCACCTGGAAATGCAAATCCAGGATGGGCTGCTCCTAGTCAGGGTGTACCTCCAGTAAATGCAGTTGGCTGGGTTGCACCTGGTCAAGGAGGTTCACATGTAAGTGCAAATGCAGGTTGGGTTGTTCCTGGACCTGGTCAAGGGCTGGCACCTGGAAGTGCCAATCCCGGTTGGTCTGCACCAGCTGGGAATCAAGGGGTGTGGGGAAGTGAGCAAAGTCATAATGGAGACAGGTTTCCCAACCAAGGGGATCGTGGTACCCATGGTGGAGGTGGAGATTCTGGTTATGGAGGTAAATCTTGGAACAGACAGTCATCATTTAGCAGCGGAGGCAGAGGGGGTTCTTCCAGGCCTCCTTTCGGGGGACAAAGAGGAGTCTGCAGGTTTCATGAGAGTGGACATTGCAGGAAAGGGGCTTCCTGTGATTTTCTACACCCTTAA 4851 0.4537 MDAEDEEAPQTKPSLPFQPHPDPDADADADAPVDLSTTVSQCDTGLQNFTNSGGGDVPPAPVHGGDAEVVITGKSSEADAVVVSTDEIKETVMVVADGGSEVQVMDVAGNEIVEDRDSVGMDDSEKRNASGSCVVGVEDEIVEGKGNEGTDVDDMVLETGKVEEEANLTIGENEDDGETNEVALTEGKKEQQQEEEEEEKQHQPEAEADADAVGSMAEDTEDAEETNEAALMEEEEEEQEQEQQRERQEAEGEGDAVGGLANDKEDAEETNEAALMKEEEEEEEEQQQRQEVDADADDGMAEEDTEAAEEIEVTEEQSTSVSGGKRKRGAGKNAKSAGRVPSKKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGRWNCGWHLCSICEKNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNEQGNNMGQVDFDDKNSWEYLFKDYYIDLKGKLSLTFEELTQAKNPWKGSDVLPSKEESPDELFEGNNDRGSDSDRSYENVDLSRPTRRKAKKRAKMRSKEGSSYSAVTVLGADGPSADGSFEWASKELLEFVMHMRNEDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKDDSQAEDLQGSVVDTEVSHLEGDGNADSFLKAGKDRRRKTRKKGDERGLQSNVDDYAAIDNHNINLIYLRRNLVEDILEDMEKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMADILLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALALQAVRVKDWLETEIMRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDEEEMDNKRQENYMRPRGSAAFGRRGMEIVSPRSGSISSDSWTGTRNYSNVNRELSRNLSSKGFSLKGDDVSNASEALNDAQLHQGRDRESQLSNSWERQKLSSSFESGAKSSQPLVTSESFSTAVLEASATPSCAGIAPPAVKINETEKMWHYKDPSGKVQGPFSMVQLRKWSNTGYFPADLRIWRTTEKQDESILLTDALAGKVSKEPPMVGETLPKAQTVHLAAQKGIEGQVGGRSTFDQNSGSWNLNSTLGSPGQTTGGIWRSKDNINSVANRPSPLAVEVPKNPANGWGSDAGVRNESTNLPSPTPQPTSGATKGQAFENTWSPTPVQLAGSLLRNSFPGGPGGLQASGVVLPENVVQNTENGSSSQAGMTSASKSEKGMILSSTDTQVHPQATTAAPVLTSGVDIKMAGVQNQVVSSHNSRIEAQGWGSGLVQKPEQQAWGGTPSQWIEPNNPATMPVRPASHGLWGDASSIQNSTSFSTGNPTGSLPTPGFVGMTTPEPWRPPTSSNQSNITAPAPAPPNIPWGMGLPGNQNINWGSGAFPANMNMNMSWMPAQVAAPGNANPGWAAPSQGVPPVNAVGWVAPGQGGSHVSANAGWVVPGPGQGLAPGSANPGWSAPAGNQGVWGSEQSHNGDRFPNQGDRGTHGGGGDSGYGGKSWNRQSSFSSGGRGGSSRPPFGGQRGVCRFHESGHCRKGASCDFLHP 1616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 882 901 - -
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 115 341 - -
Gabi2834g00016 1616 CDD SWIB-MDM2_like 571 646 - -
Gabi2834g00016 1616 Coils Coil 217 253 - -
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 181 207 - -
Gabi2834g00016 1616 Gene3D - 1057 1114 IPR035445 -
Gabi2834g00016 1616 Gene3D - 709 837 IPR036128 GO:0003677
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 243 271 - -
Gabi2834g00016 1616 SUPERFAMILY SWIB/MDM2 domain 569 647 IPR036885 -
Gabi2834g00016 1616 CDD PHD5_NSD 350 395 - -
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 1535 1550 - -
Gabi2834g00016 1616 ProSiteProfiles SWIB/MDM2 domain profile. 565 648 IPR003121 -
Gabi2834g00016 1616 SUPERFAMILY GYF domain 1048 1109 IPR035445 -
Gabi2834g00016 1616 ProSiteProfiles Zinc finger PHD-type profile. 348 414 IPR019787 -
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 212 242 - -
Gabi2834g00016 1616 Pfam Plus-3 domain 712 815 IPR004343 GO:0003677
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 1 66 - -
Gabi2834g00016 1616 ProSiteProfiles Zinc finger C3H1-type profile. 1591 1616 IPR000571 GO:0046872
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 501 533 - -
Gabi2834g00016 1616 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 442 IPR013083 -
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 1142 1235 - -
Gabi2834g00016 1616 Pfam GYF domain 1059 1101 IPR003169 GO:0005515
Gabi2834g00016 1616 CDD GYF 1056 1111 IPR003169 GO:0005515
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 272 313 - -
Gabi2834g00016 1616 SMART PHD_3 350 396 IPR001965 -
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 1515 1589 - -
Gabi2834g00016 1616 SUPERFAMILY Plus3-like 708 836 IPR036128 GO:0003677
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 882 955 - -
Gabi2834g00016 1616 ProSiteProfiles GYF domain profile. 1056 1110 IPR003169 GO:0005515
Gabi2834g00016 1616 PANTHER UNCHARACTERIZED 232 1616 - -
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 1568 1583 - -
Gabi2834g00016 1616 CDD Bbox1 396 422 - -
Gabi2834g00016 1616 Coils Coil 264 297 - -
Gabi2834g00016 1616 SMART swib_2 580 651 IPR019835 -
Gabi2834g00016 1616 FunFam Zinc finger CCCH domain-containing protein 19 340 440 - -
Gabi2834g00016 1616 FunFam Zinc finger CCCH domain-containing protein 19 708 837 - -
Gabi2834g00016 1616 Gene3D SWIB/MDM2 domain 563 656 IPR036885 -
Gabi2834g00016 1616 FunFam Zinc finger CCCH domain-containing protein 19 559 653 - -
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 939 955 - -
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 495 547 - -
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 34 54 - -
Gabi2834g00016 1616 SMART gyf_5 1057 1112 IPR003169 GO:0005515
Gabi2834g00016 1616 SUPERFAMILY FYVE/PHD zinc finger 347 400 IPR011011 -
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 1204 1235 - -
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 673 696 - -
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 987 1007 - -
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 141 168 - -
Gabi2834g00016 1616 MobiDBLite consensus disorder prediction 1144 1184 - -
Gabi2834g00016 1616 FunFam Zinc finger CCCH domain-containing protein 19 1058 1115 - -
Gabi2834g00016 1616 ProSiteProfiles Plus3 domain profile. 707 840 IPR004343 GO:0003677
Gabi2834g00016 1616 SMART rtf1 707 817 IPR004343 GO:0003677
Gabi2834g00016 1616 ProSitePatterns Zinc finger PHD-type signature. 351 411 IPR019786 -
Gabi2834g00016 1616 Pfam SWIB/MDM2 domain 573 646 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2834g00016 Gabi-Chr2834 149243 159309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2834g00016 348 435 PHD Transcription Factor Family AT5G36670 32.000 2.88e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Gabi2834g00016 Plus-3 2.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2834g00016 - - aprc:113865790 2197.55