Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2834g00012 ATGGAAGCTGCGATGGTGGATGCTCTGAAACCGAGTTTAAGGAGAGAGTTTATTTTTCAGCAAGCGCTTCGCGAGGAGATTTTGTACTTGAACGGGAACACCGTGGTTGGTGGTGAAGATTTCTCAGTGGATGATCTCCTTGACTTCTCTAACGGCGAGTTCCAACATCACTCTGAACAAGAACAAGAATACGACAAAGAAAAACACAGCTTATCTGTTTCCTCGCTGTCACATGACGACAGCAACTCCTATTCCAGCGGTGTTTCCTATGATTCCATTTTCTCCACCGAATTAGTTGTTCCGGCCGGTGATTTGGAAGACCTAGAGTGGGTTTCTCACTTCGTTGATGATTCTATACCGGAGCTGTCTCTTCTGTACCCGGTTCGTTCGGAGCAAGCGAACACGCGGGCTGAACCGGAACATAAAGTGAAGAAATCAACAACTACTTGTTTTCCCTCTGAAATGAAAATCACCACCAAGGCCAGAACCACACGCAAGAGAAAATCCAACGCTCGCCTGTGGTCACTTAGCCCCTTGCTCTCGCGTCCTTCTTCGCCGTCGTCATGTTCTTCGGTTTTTTCGTCGACCGCGCCGCCTGTCGTTTTCCGCGAGCCGCCGGCGAAGAAACAGAAGAAAAAGGTCGAGGCCCAAGTGGTCCAAGTCGTTGGGGCCCAGTTACAGAGACGGTGCAGTCATTGCCATGTGCAGAAGACGCCGCAGTGGAGGACCGGTCCACTAGGCGCCAAAACCCTTTGCAACGCGTGCGGGGTTCGCTACAAGTCCGGTCGGCTTTTTTCAGAGTATAGACCGGCTTGCAGCCCCACCTTCTGCAGCGATATTCATTCCAACAGCCACCGCAAAGTGTTGGAGATAAGGAGGAAGAAGGATATGTCTGGACCGGTTGGACCGGAGGCCGGTTTGGCTCAGACTCAATTGGTTTCGACTTACTGA 951 0.5121 MEAAMVDALKPSLRREFIFQQALREEILYLNGNTVVGGEDFSVDDLLDFSNGEFQHHSEQEQEYDKEKHSLSVSSLSHDDSNSYSSGVSYDSIFSTELVVPAGDLEDLEWVSHFVDDSIPELSLLYPVRSEQANTRAEPEHKVKKSTTTCFPSEMKITTKARTTRKRKSNARLWSLSPLLSRPSSPSSCSSVFSSTAPPVVFREPPAKKQKKKVEAQVVQVVGAQLQRRCSHCHVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRRKKDMSGPVGPEAGLAQTQLVSTY 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2834g00012 316 MobiDBLite consensus disorder prediction 56 74 - -
Gabi2834g00012 316 Pfam GATA zinc finger 230 263 IPR000679 GO:0006355|GO:0043565
Gabi2834g00012 316 PANTHER GATA TRANSCRIPTION FACTOR 31 297 - -
Gabi2834g00012 316 MobiDBLite consensus disorder prediction 56 85 - -
Gabi2834g00012 316 PIRSF Txn_fac_GATA_plant 18 315 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gabi2834g00012 316 SMART GATA_3 224 278 IPR000679 GO:0006355|GO:0043565
Gabi2834g00012 316 Gene3D - 223 274 IPR013088 GO:0006355|GO:0008270
Gabi2834g00012 316 ProSitePatterns GATA-type zinc finger domain. 230 255 IPR000679 GO:0006355|GO:0043565
Gabi2834g00012 316 ProSiteProfiles GATA-type zinc finger domain profile. 224 260 IPR000679 GO:0006355|GO:0043565
Gabi2834g00012 316 CDD ZnF_GATA 229 286 IPR000679 GO:0006355|GO:0043565
Gabi2834g00012 316 FunFam GATA transcription factor 221 304 - -
Gabi2834g00012 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2834g00012 Gabi-Chr2834 111448 113052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2834g00012 40 295 C2C2-Gata Transcription Factor Family AT4G36240 47.328 3.71e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi2834g00012 GATA 4.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2834g00012 - - gmx:100808242 358.607