Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2834g00011 ATGGAAGCTGCGATGGTGGATGCTCTGAAACCGAGTTTAAGGAGAGAGTTTATTTTTCAGCAAGCGCTTCGCGAGGAGATTTTGTACTTGAACGGGAACACCGTGGTTGGTGGTGAAGATTTCTCAGTGGATGATCTCCTTGACTTCTCTAACGGCGAGTTCCAACATCACTCTGAACAAGAACAAGAATACGACAAAGAAAAACACAGCTTATCTGTTTCCTCGCTGTCACATGACGACAGCAACTCCTATTCCAGCGGTGTTTCCTATGATTCCATTTTCTCCACCGAATTAGTTGTTCCGGTGAGTCTCTGTCCGTTCCGTTATCGTTTTCCCCCAAATTCTGTTTTGGTTTTCAAATTGAAATTGGTTTTTCTTCTACAGGCCGGTGATTTGGAAGACCTAGAGTGGGTTTCTCACTTCGTTGATGATTCTATACCGGAGCTGTCTCTTCTGTACCCGGTTCGTTCGGAGCAAGCGAACACGCGGGCTGAACCGGAACATAAAGTGAAGAAATCAACAACTACTTGTTTTCCCTCTGAAATGAAAATCACCACCAAGGCCAGAACCACACGCAAGAGAAAATCCAACGCTCGCCTGTGGTCACTTAGCCCCTTGCTCTCGCGTCCTTCTTCGCCGTCGTCATGTTCTTCGGTTTTTTCGTCGACCGCGCCGCCTGTCGTTTTCCGCGAGCCGCCGGCGAAGAAACAGAAGAAAAAGGTCGAGGCCCAAGTGGTCCAAGTCGTTGGGGCCCAGTTACAGAGACGGTGCAGTCATTGCCATGTGCAGAAGACGCCGCAGTGGAGGACCGGTCCACTAGGCGCCAAAACCCTTTGCAACGCGTGCGGGGTTCGCTACAAGTCCGGTCGGCTTTTTTCAGAGTATAGACCGGCTTGCAGCCCCACCTTCTGCAGCGATATTCATTCCAACAGCCACCGCAAAGTGTTGGAGATAAGGAGGAAGAAGGATATGTCTGGACCGGTTGGACCGGAGGCCGGTTTGGCTCAGACTCAATTGGTTTCGACTTACTGA 1032 0.5019 MEAAMVDALKPSLRREFIFQQALREEILYLNGNTVVGGEDFSVDDLLDFSNGEFQHHSEQEQEYDKEKHSLSVSSLSHDDSNSYSSGVSYDSIFSTELVVPVSLCPFRYRFPPNSVLVFKLKLVFLLQAGDLEDLEWVSHFVDDSIPELSLLYPVRSEQANTRAEPEHKVKKSTTTCFPSEMKITTKARTTRKRKSNARLWSLSPLLSRPSSPSSCSSVFSSTAPPVVFREPPAKKQKKKVEAQVVQVVGAQLQRRCSHCHVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRRKKDMSGPVGPEAGLAQTQLVSTY 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2834g00011 343 PIRSF Txn_fac_GATA_plant 18 104 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gabi2834g00011 343 PIRSF Txn_fac_GATA_plant 113 342 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gabi2834g00011 343 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 251 312 - -
Gabi2834g00011 343 Gene3D - 250 301 IPR013088 GO:0006355|GO:0008270
Gabi2834g00011 343 PANTHER GATA TRANSCRIPTION FACTOR 31 324 - -
Gabi2834g00011 343 CDD ZnF_GATA 256 313 IPR000679 GO:0006355|GO:0043565
Gabi2834g00011 343 ProSitePatterns GATA-type zinc finger domain. 257 282 IPR000679 GO:0006355|GO:0043565
Gabi2834g00011 343 MobiDBLite consensus disorder prediction 58 84 - -
Gabi2834g00011 343 FunFam GATA transcription factor 248 331 - -
Gabi2834g00011 343 Pfam GATA zinc finger 257 290 IPR000679 GO:0006355|GO:0043565
Gabi2834g00011 343 MobiDBLite consensus disorder prediction 58 74 - -
Gabi2834g00011 343 SMART GATA_3 251 305 IPR000679 GO:0006355|GO:0043565
Gabi2834g00011 343 ProSiteProfiles GATA-type zinc finger domain profile. 251 287 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2834g00011 Gabi-Chr2834 111448 113061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2834g00011 40 322 C2C2-Gata Transcription Factor Family AT4G36240 43.599 1.70e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi2834g00011 GATA 4.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2834g00011 - - gmx:100808242 343.969