Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2834g00001 ATGCAAGGCCAAGAAGTAGTAGTAAGGGGTCCAAAGTGCCAAGACTGTGGGAACCAAGCCAAGAAGGATTGTTCATACTTTAGGTGCAGAACTTGCTGCAAGAACAAAGGGTTTCAGTGCCAAACACATATCAAGAGCACTTGGATGCCTGTGGATAGGAGGCGACAGAGTGAGGAACAGCCATGTCCCACTACTAATCCACCTGACTTTCAGCCCAACCAGAACCCATATTCAGGTTTAGAGCAGTTCAAATTTCCAGCTACTGTGAACTCGACGGCGATATTTCGGTGCATTCAAGTTCATTCTATGGATGATGCGATTAATGAAGTCGCGTATCAAACATCTGTCAACATTGGAGGACATGTATTTACTGGTCTTCTTTTTAATCAAGGCCCTGATCGAAGCTTCTATGCTAGGGGTGACAGTTCCACAGGCCTTGTTGATCAGCAACAGAATCTCAATCATATCGATGCTCCTTCAGTCCACACTAATGATGGTGCAACTATGGCTCCACTATCTGCCTCTGCTACTCATGATGACCCTTTTTTATCTCCACCACTGTATCCGTTTCCCCTTCCTCCCTTAAGGCCGGGTATGCCATATTTCTCAATACCAAGACCTTAG 624 0.4567 MQGQEVVVRGPKCQDCGNQAKKDCSYFRCRTCCKNKGFQCQTHIKSTWMPVDRRRQSEEQPCPTTNPPDFQPNQNPYSGLEQFKFPATVNSTAIFRCIQVHSMDDAINEVAYQTSVNIGGHVFTGLLFNQGPDRSFYARGDSSTGLVDQQQNLNHIDAPSVHTNDGATMAPLSASATHDDPFLSPPLYPFPLPPLRPGMPYFSIPRP 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2834g00001 207 NCBIfam putative zinc finger domain, LRP1 type 12 54 IPR006510 -
Gabi2834g00001 207 NCBIfam LRP1 C-terminal domain 84 132 IPR006511 -
Gabi2834g00001 207 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 10 191 IPR007818 GO:0003700|GO:0006355
Gabi2834g00001 207 MobiDBLite consensus disorder prediction 51 71 - -
Gabi2834g00001 207 Pfam Domain of unknown function (DUF702) 82 133 - -
Gabi2834g00001 207 Pfam Domain of unknown function (DUF702) 11 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2834g00001 Gabi-Chr2834 7394 8719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2834g00001 6 131 C2H2 Transcription Factor Family AT2G21400 51.825 1.68e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gabi2834g00001 DUF702 1.7e-18 No_clan