Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2829g00017 ATGGAAGGTTCATCTGGGTCTACTTGGCACAAGTCTTTCAGTTCTAGGGCATTAGATGCTTCTGGAGGCTCAGTCATGAACCCAAGGCCTCATTCTTCTGAAAGAAACACCTTCTCTGGTGAGGCTTCTCAAGATTCTTACTTCATAAATGAAAGAGACAGGGTTGTGTTAGCTCAAGATGATCAGTCCAAAATCCTTGGTGGTTTTTCTGGTGTTTGTGAGGATGGAGTAGGGGTTGACCCTTTTGTTTGTACTATGGATTGTGGTGATATTAGCTTGAGGCTATGGTTAGATAAACCTGAACGATCAGTGGATGTCTTTGAATGCTTACACATATTTAGGCAAATAGTAGACATTGTTACTGTGGCCCATTCTCAAGGAATTGTTGTTCATAATGTGAGGCCCTCTTGCTTTGTCATGTCATCTTTCAATCATGTCTCATTTATTGAGTCAGCATCTTGTTCAGACTCCTACTCTGATACTTTAGAAGAAGATGGATTAAACAGCCAAGCTGTTGAGATTAAACTTCCAACATCTATCTGTCCCCATGATATGCATCAGGAGAGATGTTTAGGAAGTGATGATTTTGCACCTGTCAAGACTTCAACAACTGCTTTGTCAGACTCTAGTTGCATGCTGTCAAGTGCCGTGTTTGCAGCGCCTGCATCGTTAATAGAAGATACAGAAGAAAATAAAATGAAAGACAGGAGAATGGCTGAGGAAGTAGAAGGAAAGAAGCAATCATTTCCAATGAAACAGGTACTACTGATGGAGTCGAGTTGGTATACTAGTCCTGAAGAGGTAGCTGGTACTCCAAGTTCCTGTGCTTCGGACGTTTACCGATTGGGGGTTCTCCTTTTTGAGCTATTCTGTCCACTCAGCTCAAGAGAAGAAAAGAGCAGAACTATGTCTAGCCTTAGACATAGAGTTCTTCCTCCACAGGTACTTGTAATGTGGCCTAAAGAAGCTTCATTTTGCTTATGGTTATTACATCCTGAGCCTAGTAGTCGTCCAACATTGGGGGAGTTGTTGCAGAGTGAGTTTCTTAATGAACCCAGAGATGATATAGAAGAGCGTGAAGCAGCAATAGAACTTAGAGAAAGGATAGAGAGTCAGGAGTTGTTGCTAGAATTCCTTTCATTAATTCAACAGAAAAAAGGGGAAGCCGCTGAGAAGTTGCAACGTACAGTGTCTTTTCTGTGTTCAGATATTGAAGAAGTGACTCAGCAGCAAACTATATTTAAAAAGATAACTGGCACTGGACTACGGAATGATGATTGTTCAGCTTCAAGTTTCCCATCTCCGGCAACTGTTGACAGTGAGGATTCTGCTTGTCTAGGGACCAGAAAACGGGTAAGACCAGGTCCGTGTGTTAACAACACTGAGGGATGTGATAATAACAGAGTTGATGATAAGAAAAATCATGGAAGTGTTCTTTCCCGAAGTTCACGGCTTTTGAAGAACTTCAAGAAACTAGAGTCAGCGTACTTTTTGACACGATGCAGATCAACCAGAGGGTCTGTCATTGTGTCTGAAAGTTGTATCAATAAAGTAGCATCGAAAGAGCAGTACAGGGAGGGAAAATGTCCTTGGATAAATCCTTTCCTTGAGGGTTTGCGCAAGTACCTATCATTCAGTGAGTTAAAGGTTAAGGCTGACCTGAAACAAGGAGATCTTTTGCAGTCTTCCAACCTGGTCTGCTCACTCAGTTTTGATCGCGATGCAGAATTTTTTGCTACAGCAGGCGTAAATAAGAAAATTAAAGTTTTTGAATGTGACACAACCATAAATGAAGATCGTGATATCCACTATCCAGTAGCGGAGATGGTTAGCTGGTCAAAGTTGAGCAGTGTATGTTGGAATACTTACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCAAGTGCAGTCTGAAATGAGGGAGCACGAGCAACGGGTATGGTCCATTGATTTCTCATCAGCAGACCCAACAATCTTGGCAAGTGGGAGCGATGACGGTTCTGTCAAGCTATGGAGTATCAATCAGGCAATTCCATTTTTGCACTTGGTGGATCTCAGCTTTGAAACTAAACGGAGTTAG 2115 0.4184 MEGSSGSTWHKSFSSRALDASGGSVMNPRPHSSERNTFSGEASQDSYFINERDRVVLAQDDQSKILGGFSGVCEDGVGVDPFVCTMDCGDISLRLWLDKPERSVDVFECLHIFRQIVDIVTVAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSYSDTLEEDGLNSQAVEIKLPTSICPHDMHQERCLGSDDFAPVKTSTTALSDSSCMLSSAVFAAPASLIEDTEENKMKDRRMAEEVEGKKQSFPMKQVLLMESSWYTSPEEVAGTPSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQVLVMWPKEASFCLWLLHPEPSSRPTLGELLQSEFLNEPRDDIEEREAAIELRERIESQELLLEFLSLIQQKKGEAAEKLQRTVSFLCSDIEEVTQQQTIFKKITGTGLRNDDCSASSFPSPATVDSEDSACLGTRKRVRPGPCVNNTEGCDNNRVDDKKNHGSVLSRSSRLLKNFKKLESAYFLTRCRSTRGSVIVSESCINKVASKEQYREGKCPWINPFLEGLRKYLSFSELKVKADLKQGDLLQSSNLVCSLSFDRDAEFFATAGVNKKIKVFECDTTINEDRDIHYPVAEMVSWSKLSSVCWNTYIKSQIASSNFEGVVQLWDVTRSQVQSEMREHEQRVWSIDFSSADPTILASGSDDGSVKLWSINQAIPFLHLVDLSFETKRS 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2829g00017 704 SUPERFAMILY Protein kinase-like (PK-like) 79 357 IPR011009 -
Gabi2829g00017 704 MobiDBLite consensus disorder prediction 18 40 - -
Gabi2829g00017 704 Gene3D Transferase(Phosphotransferase) domain 1 90 359 - -
Gabi2829g00017 704 Coils Coil 390 410 - -
Gabi2829g00017 704 ProSiteProfiles Trp-Asp (WD) repeats profile. 651 686 IPR001680 GO:0005515
Gabi2829g00017 704 PANTHER PROTEIN SPA1-RELATED 2 47 688 IPR044630 GO:0009640
Gabi2829g00017 704 SMART WD40_4 605 641 IPR001680 GO:0005515
Gabi2829g00017 704 SMART WD40_4 644 684 IPR001680 GO:0005515
Gabi2829g00017 704 SMART WD40_4 556 591 IPR001680 GO:0005515
Gabi2829g00017 704 Gene3D - 537 700 IPR015943 GO:0005515
Gabi2829g00017 704 SUPERFAMILY WD40 repeat-like 563 687 IPR036322 GO:0005515
Gabi2829g00017 704 Pfam WD domain, G-beta repeat 647 684 IPR001680 GO:0005515
Gabi2829g00017 704 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 651 686 - -
Gabi2829g00017 704 SMART serkin_6 2 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2829g00017 704 Coils Coil 225 245 - -
Gabi2829g00017 704 ProSiteProfiles Protein kinase domain profile. 1 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2829g00017 Gabi-Chr2829 302286 308336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2829g00017 568 685 Miscellaneous Gene Families AT5G08390 27.966 2.63e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Gabi2829g00017 WD40 3e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2829g00017 K26557 - gmx:100811457 1032.71