Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2829g00016 ATGGAAGGTTCATCTGGGTCTACTTGGCACAAGTCTTTCAGTTCTAGGGCATTAGATGCTTCTGGAGGCTCAGTCATGAACCCAAGGCCTCATTCTTCTGAAAGAAACACCTTCTCTGGTGAGGCTTCTCAAGATTCTTACTTCATAAATGAAAGAGACAGGGTTGTGTTAGCTCAAGATGATCAGTCCAAAATCCTTGGTGGTTTTTCTGGTGTTTGTGAGGATGGAGTAGGGGTTGACCCTTTTGTTTGTACTATGGATTGTGGTGATATTAGCTTGAGGCTATGGTTAGATAAACCTGAACGATCAGTGGATGTCTTTGAATGCTTACACATATTTAGGCAAATAGTAGACATTGTTACTGTGGCCCATTCTCAAGGAATTGTTGTTCATAATGTGAGGCCCTCTTGCTTTGTCATGTCATCTTTCAATCATGTCTCATTTATTGAGTCAGCATCTTGTTCAGACTCCTACTCTGATACTTTAGAAGAAGATGGATTAAACAGCCAAGCTGTTGAGATTAAACTTCCAACATCTATCTGTCCCCATGATATGCATCAGGAGAGATGTTTAGGAAGTGATGATTTTGCACCTGTCAAGACTTCAACAACTGCTTTGTCAGACTCTAGTTGCATGCTGTCAAGTGCCGTGTTTGCAGCGCCTGCATCGTTAATAGAAGATACAGAAGAAAATAAAATGAAAGACAGGAGAATGGCTGAGGAAGTAGAAGGAAAGAAGCAATCATTTCCAATGAAACAGGTACTACTGATGGAGTCGAGTTGGTATACTAGTCCTGAAGAGGTAGCTGGTACTCCAAGTTCCTGTGCTTCGGACGTTTACCGATTGGGGGTTCTCCTTTTTGAGCTATTCTGTCCACTCAGCTCAAGAGAAGAAAAGAGCAGAACTATGTCTAGCCTTAGACATAGAGTTCTTCCTCCACAGGTACTTGTAATGTGGCCTAAAGAAGCTTCATTTTGCTTATGGTTATTACATCCTGAGCCTAGTAGTCGTCCAACATTGGGGGAGTTGTTGCAGAGTGAGTTTCTTAATGAACCCAGAGATGATATAGAAGAGCGTGAAGCAGCAATAGAACTTAGAGAAAGGATAGAGAGTCAGGAGTTGTTGCTAGAATTCCTTTCATTAATTCAACAGAAAAAAGGGGAAGCCGCTGAGAAGTTGCAACGTACAGTGTCTTTTCTGTGTTCAGATATTGAAGAAGTGACTCAGCAGCAAACTATATTTAAAAAGATAACTGGCACTGGACTACGGAATGATGATTGTTCAGCTTCAAGTTTCCCATCTCCGGCAACTGTTGACAGTGAGGATTCTGCTTGTCTAGGGACCAGAAAACGGGTAAGACCAGGTCCGTGTGTTAACAACACTGAGGGATGTGATAATAACAGAGTTGATGATAAGAAAAATCATGGAAGTGTTCTTTCCCGAAGTTCACGGCTTTTGAAGAACTTCAAGAAACTAGAGTCAGCGTACTTTTTGACACGATGCAGATCAACCAGAGGGTCTGTCATTGTGTCTGAAAGTTGTATCAATAAAGTAGCATCGAAAGAGCAGTACAGGGAGGGAAAATGTCCTTGGATAAATCCTTTCCTTGAGGGTTTGCGCAAGTACCTATCATTCAGTGAGTTAAAGGTTAAGGCTGACCTGAAACAAGGAGATCTTTTGCAGTCTTCCAACCTGGTCTGCTCACTCAGTTTTGATCGCGATGCAGAATTTTTTGCTACAGCAGGCGTAAATAAGAAAATTAAAGTTTTTGAATGTGACACAACCATAAATGAAGATCGTGATATCCACTATCCAGTAGCGGAGATGGTTAGCTGGTCAAAGTTGAGCAGTGTATGTTGGAATACTTACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCAAGTGCAGTCTGAAATGAGGGAGCACGAGCAACGGGTATGGTCCATTGATTTCTCATCAGCAGACCCAACAATCTTGGCAAGTGGGAGCGATGACGGTTCTGTCAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGTACCATCAAAACAAATGCAAATGTGTGCTGTGTTCAGTTTCCCATGGACTTTGCTCATTTCCTTGCATTTGGTTCAGCAGATCATCAAATATATTACTATGATCTTCGCAACCTGAAAATGCCTCTTTGTACATTAGTTGGACATAATAGGACAGTGAGCTACATCAAATTCGTGGACAGTGTGAGCCTAGTCTCGGCATCCACAGATAACACTTTGAAACTTTGGGATTTGTCCATGTGCGCTTCCCGTGTTATAGACTCGCCGATTCAATCATTCACCGGTCACATGAATGTTAAGAACTTCGTGGGGTTGTCTGTGTCCGATGGTTACATTGCTACTGGTTCAGAGACAAACGAGGTGTTCATATATCACAAGGCTTTTCCCATGCCAGCATTGTCATTCAAGTTTAACAATAGGGATCCAATTTCTGGGAATGAAGTGGATGATTCTGCACATTTCATCTCTTCTGTTTGTTGGCGTGGTCAATCTTCCACCTTACTTGCTGCAAATTCCACTGGGAATGTCAAAATTCTTGAGATGACTTAA 2622 0.4184 MEGSSGSTWHKSFSSRALDASGGSVMNPRPHSSERNTFSGEASQDSYFINERDRVVLAQDDQSKILGGFSGVCEDGVGVDPFVCTMDCGDISLRLWLDKPERSVDVFECLHIFRQIVDIVTVAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSYSDTLEEDGLNSQAVEIKLPTSICPHDMHQERCLGSDDFAPVKTSTTALSDSSCMLSSAVFAAPASLIEDTEENKMKDRRMAEEVEGKKQSFPMKQVLLMESSWYTSPEEVAGTPSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQVLVMWPKEASFCLWLLHPEPSSRPTLGELLQSEFLNEPRDDIEEREAAIELRERIESQELLLEFLSLIQQKKGEAAEKLQRTVSFLCSDIEEVTQQQTIFKKITGTGLRNDDCSASSFPSPATVDSEDSACLGTRKRVRPGPCVNNTEGCDNNRVDDKKNHGSVLSRSSRLLKNFKKLESAYFLTRCRSTRGSVIVSESCINKVASKEQYREGKCPWINPFLEGLRKYLSFSELKVKADLKQGDLLQSSNLVCSLSFDRDAEFFATAGVNKKIKVFECDTTINEDRDIHYPVAEMVSWSKLSSVCWNTYIKSQIASSNFEGVVQLWDVTRSQVQSEMREHEQRVWSIDFSSADPTILASGSDDGSVKLWSINQGVSVGTIKTNANVCCVQFPMDFAHFLAFGSADHQIYYYDLRNLKMPLCTLVGHNRTVSYIKFVDSVSLVSASTDNTLKLWDLSMCASRVIDSPIQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFNNRDPISGNEVDDSAHFISSVCWRGQSSTLLAANSTGNVKILEMT 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2829g00016 873 SMART WD40_4 687 726 IPR001680 GO:0005515
Gabi2829g00016 873 SMART WD40_4 605 641 IPR001680 GO:0005515
Gabi2829g00016 873 SMART WD40_4 777 816 IPR001680 GO:0005515
Gabi2829g00016 873 SMART WD40_4 730 768 IPR001680 GO:0005515
Gabi2829g00016 873 SMART WD40_4 644 684 IPR001680 GO:0005515
Gabi2829g00016 873 SMART WD40_4 832 871 IPR001680 GO:0005515
Gabi2829g00016 873 SMART WD40_4 556 591 IPR001680 GO:0005515
Gabi2829g00016 873 MobiDBLite consensus disorder prediction 18 40 - -
Gabi2829g00016 873 Gene3D Transferase(Phosphotransferase) domain 1 90 359 - -
Gabi2829g00016 873 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 534 873 - -
Gabi2829g00016 873 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 651 688 - -
Gabi2829g00016 873 ProSitePatterns Trp-Asp (WD) repeats signature. 755 769 IPR019775 -
Gabi2829g00016 873 Coils Coil 390 410 - -
Gabi2829g00016 873 ProSiteProfiles Trp-Asp (WD) repeats profile. 737 770 IPR001680 GO:0005515
Gabi2829g00016 873 SUPERFAMILY Protein kinase-like (PK-like) 80 357 IPR011009 -
Gabi2829g00016 873 SUPERFAMILY WD40 repeat-like 561 870 IPR036322 GO:0005515
Gabi2829g00016 873 PANTHER PROTEIN SPA1-RELATED 2 48 872 IPR044630 GO:0009640
Gabi2829g00016 873 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 737 770 - -
Gabi2829g00016 873 ProSiteProfiles Trp-Asp (WD) repeats profile. 651 693 IPR001680 GO:0005515
Gabi2829g00016 873 Gene3D - 537 873 IPR015943 GO:0005515
Gabi2829g00016 873 PRINTS G protein beta WD-40 repeat signature 628 642 IPR020472 -
Gabi2829g00016 873 PRINTS G protein beta WD-40 repeat signature 755 769 IPR020472 -
Gabi2829g00016 873 PRINTS G protein beta WD-40 repeat signature 671 685 IPR020472 -
Gabi2829g00016 873 SMART serkin_6 2 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2829g00016 873 Coils Coil 225 245 - -
Gabi2829g00016 873 ProSiteProfiles Protein kinase domain profile. 1 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2829g00016 873 Pfam WD domain, G-beta repeat 647 684 IPR001680 GO:0005515
Gabi2829g00016 873 Pfam WD domain, G-beta repeat 733 768 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2829g00016 Gabi-Chr2829 302286 312948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2829g00016 637 770 Miscellaneous Gene Families AT5G08390 28.889 8.10e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Gabi2829g00016 WD40 3.9e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2829g00016 K26557 - gmx:100811457 1368.21