Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2829g00015 ATGGAAGGTTCATCTGGGTCTACTTGGCACAAGTCTTTCAGTTCTAGGGCATTAGATGCTTCTGGAGGCTCAGTCATGAACCCAAGGCCTCATTCTTCTGAAAGAAACACCTTCTCTGGTGAGGCTTCTCAAGATTCTTACTTCATAAATGAAAGAGACAGGGTTGTGTTAGCTCAAGATGATCAGTCCAAAATCCTTGGTGGTTTTTCTGGTGTTTGTGAGGATGGAGTAGGGGTTGACCCTTTTGTTTGTACTATGGATTGTGGTGATATTAGCTTGAGGCTATGGTTAGATAAACCTGAACGATCAGTGGATGTCTTTGAATGCTTACACATATTTAGGCAAATAGTAGACATTGTTACTGTGGCCCATTCTCAAGGAATTGTTGTTCATAATGTGAGGCCCTCTTGCTTTGTCATGTCATCTTTCAATCATGTCTCATTTATTGAGTCAGCATCTTGTTCAGACTCCTACTCTGATACTTTAGAAGAAGATGGATTAAACAGCCAAGCTGTTGAGATTAAACTTCCAACATCTATCTGTCCCCATGATATGCATCAGGAGAGATGTTTAGGAAGTGATGATTTTGCACCTGTCAAGACTTCAACAACTGCTTTGTCAGACTCTAGTTGCATGCTGTCAAGTGCCGTGTTTGCAGCGCCTGCATCGTTAATAGAAGATACAGAAGAAAATAAAATGAAAGACAGGAGAATGGCTGAGGAAGTAGAAGGAAAGAAGCAATCATTTCCAATGAAACAGGTACTACTGATGGAGTCGAGTTGGTATACTAGTCCTGAAGAGGTAGCTGGTACTCCAAGTTCCTGTGCTTCGGACGTTTACCGATTGGGGGTTCTCCTTTTTGAGCTATTCTGTCCACTCAGCTCAAGAGAAGAAAAGAGCAGAACTATGTCTAGCCTTAGACATAGAGTTCTTCCTCCACAGGTACTTGTAATGTGGCCTAAAGAAGCTTCATTTTGCTTATGGTTATTACATCCTGAGCCTAGTAGTCGTCCAACATTGGGGGAGTTGTTGCAGAGTGAGTTTCTTAATGAACCCAGAGATGATATAGAAGAGCGTGAAGCAGCAATAGAACTTAGAGAAAGGATAGAGAGTCAGGAGTTGTTGCTAGAATTCCTTTCATTAATTCAACAGAAAAAAGGGGAAGCCGCTGAGAAGTTGCAACGTACAGTGTCTTTTCTGTGTTCAGATATTGAAGAAGTGACTCAGCAGCAAACTATATTTAAAAAGATAACTGGCACTGGACTACGGAATGATGATTGTTCAGCTTCAAGTTTCCCATCTCCGGCAACTGTTGACAGTGAGGATTCTGCTTGTCTAGGGACCAGAAAACGGGTAAGACCAGGTCCGTGTGTTAACAACACTGAGGGATGTGATAATAACAGAGTTGATGATAAGAAAAATCATGGAAGTGTTCTTTCCCGAAGTTCACGGCTTTTGAAGAACTTCAAGAAACTAGAGTCAGCGTACTTTTTGACACGATGCAGATCAACCAGAGGGTCTGTCATTGTGTCTGAAAGTTGTATCAATAAAGTAGCATCGAAAGAGCAGTACAGGGAGGGAAAATGTCCTTGGATAAATCCTTTCCTTGAGGGTTTGCGCAAGTACCTATCATTCAGTGAGTTAAAGGTTAAGGCTGACCTGAAACAAGGAGATCTTTTGCAGTCTTCCAACCTGGTCTGCTCACTCAGTTTTGATCGCGATGCAGAATTTTTTGCTACAGCAGGCGTAAATAAGAAAATTAAAGTTTTTGAATGTGACACAACCATAAATGAAGATCGTGATATCCACTATCCAGTAGCGGAGATGGTTAGCTGGTCAAAGTTGAGCAGTGTATGTTGGAATACTTACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCAAGTGCAGTCTGAAATGAGGGAGCACGAGCAACGGGTATGGTCCATTGATTTCTCATCAGCAGACCCAACAATCTTGGCAAGTGGGAGCGATGACGGTTCTGTCAAGCTATGGAGTATCAATCAGGCAATTCCATTTTTGCACTTGGGAGTTAGTGTTGGTACCATCAAAACAAATGCAAATGTGTGCTGTGTTCAGTTTCCCATGGACTTTGCTCATTTCCTTGCATTTGGTTCAGCAGATCATCAAATATATTACTATGATCTTCGCAACCTGAAAATGCCTCTTTGTACATTAGTTGGACATAATAGGACAGTGAGCTACATCAAATTCGTGGACAGTGTGAGCCTAGTCTCGGCATCCACAGATAACACTTTGAAACTTTGGGATTTGTCCATGTGCGCTTCCCGTGTTATAGACTCGCCGATTCAATCATTCACCGGTCACATGAATGTTAAGAACTTCGTGGGGTTGTCTGTGTCCGATGGTTACATTGCTACTGGTTCAGAGACAAACGAGGTGTTCATATATCACAAGGCTTTTCCCATGCCAGCATTGTCATTCAAGTTTAACAATAGGGATCCAATTTCTGGGAATGAAGTGGATGATTCTGCACATTTCATCTCTTCTGTTTGTTGGCGTGGTCAATCTTCCACCTTACTTGCTGCAAATTCCACTGGGAATGTCAAAATTCTTGAGATGACTTAA 2643 0.4181 MEGSSGSTWHKSFSSRALDASGGSVMNPRPHSSERNTFSGEASQDSYFINERDRVVLAQDDQSKILGGFSGVCEDGVGVDPFVCTMDCGDISLRLWLDKPERSVDVFECLHIFRQIVDIVTVAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSYSDTLEEDGLNSQAVEIKLPTSICPHDMHQERCLGSDDFAPVKTSTTALSDSSCMLSSAVFAAPASLIEDTEENKMKDRRMAEEVEGKKQSFPMKQVLLMESSWYTSPEEVAGTPSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQVLVMWPKEASFCLWLLHPEPSSRPTLGELLQSEFLNEPRDDIEEREAAIELRERIESQELLLEFLSLIQQKKGEAAEKLQRTVSFLCSDIEEVTQQQTIFKKITGTGLRNDDCSASSFPSPATVDSEDSACLGTRKRVRPGPCVNNTEGCDNNRVDDKKNHGSVLSRSSRLLKNFKKLESAYFLTRCRSTRGSVIVSESCINKVASKEQYREGKCPWINPFLEGLRKYLSFSELKVKADLKQGDLLQSSNLVCSLSFDRDAEFFATAGVNKKIKVFECDTTINEDRDIHYPVAEMVSWSKLSSVCWNTYIKSQIASSNFEGVVQLWDVTRSQVQSEMREHEQRVWSIDFSSADPTILASGSDDGSVKLWSINQAIPFLHLGVSVGTIKTNANVCCVQFPMDFAHFLAFGSADHQIYYYDLRNLKMPLCTLVGHNRTVSYIKFVDSVSLVSASTDNTLKLWDLSMCASRVIDSPIQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFNNRDPISGNEVDDSAHFISSVCWRGQSSTLLAANSTGNVKILEMT 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2829g00015 880 ProSiteProfiles Trp-Asp (WD) repeats profile. 744 777 IPR001680 GO:0005515
Gabi2829g00015 880 MobiDBLite consensus disorder prediction 18 40 - -
Gabi2829g00015 880 SUPERFAMILY WD40 repeat-like 561 877 IPR036322 GO:0005515
Gabi2829g00015 880 PRINTS G protein beta WD-40 repeat signature 628 642 IPR020472 -
Gabi2829g00015 880 PRINTS G protein beta WD-40 repeat signature 762 776 IPR020472 -
Gabi2829g00015 880 PRINTS G protein beta WD-40 repeat signature 671 685 IPR020472 -
Gabi2829g00015 880 Gene3D Transferase(Phosphotransferase) domain 1 90 359 - -
Gabi2829g00015 880 Coils Coil 390 410 - -
Gabi2829g00015 880 ProSiteProfiles Trp-Asp (WD) repeats profile. 651 686 IPR001680 GO:0005515
Gabi2829g00015 880 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 744 777 - -
Gabi2829g00015 880 SUPERFAMILY Protein kinase-like (PK-like) 79 357 IPR011009 -
Gabi2829g00015 880 SMART WD40_4 605 641 IPR001680 GO:0005515
Gabi2829g00015 880 SMART WD40_4 839 878 IPR001680 GO:0005515
Gabi2829g00015 880 SMART WD40_4 644 684 IPR001680 GO:0005515
Gabi2829g00015 880 SMART WD40_4 737 775 IPR001680 GO:0005515
Gabi2829g00015 880 SMART WD40_4 784 823 IPR001680 GO:0005515
Gabi2829g00015 880 SMART WD40_4 556 591 IPR001680 GO:0005515
Gabi2829g00015 880 SMART WD40_4 694 733 IPR001680 GO:0005515
Gabi2829g00015 880 ProSitePatterns Trp-Asp (WD) repeats signature. 762 776 IPR019775 -
Gabi2829g00015 880 PANTHER PROTEIN SPA1-RELATED 2 48 879 IPR044630 GO:0009640
Gabi2829g00015 880 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 651 686 - -
Gabi2829g00015 880 Pfam WD domain, G-beta repeat 740 775 IPR001680 GO:0005515
Gabi2829g00015 880 Pfam WD domain, G-beta repeat 647 684 IPR001680 GO:0005515
Gabi2829g00015 880 SMART serkin_6 2 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2829g00015 880 Coils Coil 225 245 - -
Gabi2829g00015 880 ProSiteProfiles Protein kinase domain profile. 1 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2829g00015 880 Gene3D - 537 880 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2829g00015 Gabi-Chr2829 302286 312948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2829g00015 641 822 Miscellaneous Gene Families AT5G08390 25.000 8.06e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Gabi2829g00015 WD40 3.9e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2829g00015 K26557 - gmx:100811457 1361.28