Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2829g00014 ATGGGTAGCATCTGTTGCAAGCCCTCTTCCATTGAAGATAGCAAGGAGAGCCCAAGGGAGCGTTTGTCAAGCAAGGCTTCATTGGACTCTCATGTGTCTAGGGGTACTTCATTGAGGAGGGAGGAAGCATATGGAGTGAAGGATAGATATGATGGTAATGATGTGAGAACTGCATTGATTGATAAGGTAGGGAATGGTTCTGTCCGGTCGCAAGGTGATAATGTTGAAAGGAAGAGGGAGAGAATGGAATATGTTTCTGCTCAACAACATCCAAGGGTTGGTAGTGTTCCCAAAGCCATGGAAGGGGAGCAGGTTGCAGCTGGATGGCCCTCCTGGCTTGCATCAGTGGCTGGAGAGGCTATCAAGGGATGGTTACCGCGCCGTGCAGATTCTTTTGAGAAGTTGGATAAAATTGGACAGGGAACTTATAGTAATGTTTACAGGGCTCGTGATCTTGAGCAAAAGAAAATTGTTGCTTTGAAAAAAGTAAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCAAATCCTGCGTAGGCTTAATCATCCAAACGTCATAAAACTGGAAGGCTTGGTTACGTCAAGGATGTCTTGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACTTGGCTGGGCTTGCGTCACATCCTGGTTTGAAGTTTACAGAAGCACAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCTGTGGTGTGCTGCACCGCGACATTAAGGGTTCCAACCTTTTGATTGACAATAATGGAGTCTTGAAGATTGCAGACTTTGGTTTGGCGAGTTTTTTCAACCCCAATCAAATTCAGCCTCTAACGAGCCGAGTTGTCACCCTTTGGTACCGGCCACCGGAGCTTTTACTTGGAGCCACGTACTATGGCACCACTGTAGATTTATGGAGTACAGGTTGCATACTTGCTGAGTTGTATGCTGGCAAACCTATAATGCCTGGAAGAACTGAGGTGGAGCAGTTACATAAGATTTTCAAACTTTGTGGTTCACCTTCAGAGGATTATTGGAGAAAATCAAAGTTGCCCCATGCAACAATATTTAAGCCTCAACAGCCCTATAGGCGTTGTGTTGCTGAAACATTCAAGGACTTTCCTACACCAGCATTAGCACTCATGGAGATCCTTTTGTCCGTAGATCCCGCTGATCGTGGAACTGCAGCATCCGCTTTGAACAGTGAGTTCTTCAGAACAAAGCCTCTACCTTGTGATCCTTTGATCTTGCCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAAGTACGGGATGAAGAAGCAAGAAGACAAGGGATAGCAGGAAGCAAGGGCCAGAGACATGACCTTGAAAGGAGAGGGATAAGAGAATCTCGAGCAGTCCCTGCACCTGATGCCAATGCTGAACTTGTCTTGTCAATGCAGAAGAGACAAGGTCAGGCTCATTCTAAAAGCAGAAGTGAGAAGTTTAACCCTCATCCAGAAGAAGCTTCTGGATTTCCCATTGATCCCCCTAGACCGTCACAAGCAGTAGATGTAGGTGTAGATCCTCAGGTACAGCAACATAAAAGAGCCTCCCATTCTGGTCCGCTGGCTCACCACGCTGCATGGGCTAAAACTGGAAAGAACCAGGATGACAATCCAAAGATTTCAGTTGGGGGCGACCTATCAAAAATCTCAGGCTTAGTTTCAGCCAGGTGTATGTTGTCAGATGATCGAAGAGAAAGGTCTGGTTCATCACACATGGAGGCTTCAAAACTAATTAGCAGGTTCCCAGGATCATTCAAGGAGGCATATGATTCGACAATGCAACAGGATCAAAGAAAACATGTAAATAATAGCCTAGTAGGTGCTTCTCAAAAGGAAGAAGGGAGAGGCAGCCACAAAGACCCTGTTCTTGTTGGTTATGGGTCAAAGGGTCATAAAATTCATTATTCTGGTCCATTGCTAGTTCCATCAAGCAACATGGATCAGATGTTGAAAGACCATGACCGTGAAATTCAAGAGGCTGTTAGAAGAGCACGTTTGGACAAGGCAAGAATGAGAAGACTTCAAGCCGAAGGGAACCAGATAACCAATTCATTATTGGTTTCTGGTCGTTGA 2136 0.4522 MGSICCKPSSIEDSKESPRERLSSKASLDSHVSRGTSLRREEAYGVKDRYDGNDVRTALIDKVGNGSVRSQGDNVERKRERMEYVSAQQHPRVGSVPKAMEGEQVAAGWPSWLASVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIQILRRLNHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGVLKIADFGLASFFNPNQIQPLTSRVVTLWYRPPELLLGATYYGTTVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPTPALALMEILLSVDPADRGTAASALNSEFFRTKPLPCDPLILPKYPPSKEFDAKVRDEEARRQGIAGSKGQRHDLERRGIRESRAVPAPDANAELVLSMQKRQGQAHSKSRSEKFNPHPEEASGFPIDPPRPSQAVDVGVDPQVQQHKRASHSGPLAHHAAWAKTGKNQDDNPKISVGGDLSKISGLVSARCMLSDDRRERSGSSHMEASKLISRFPGSFKEAYDSTMQQDQRKHVNNSLVGASQKEEGRGSHKDPVLVGYGSKGHKIHYSGPLLVPSSNMDQMLKDHDREIQEAVRRARLDKARMRRLQAEGNQITNSLLVSGR 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2829g00014 711 CDD STKc_CDK9_like 132 416 - -
Gabi2829g00014 711 FunFam probable serine/threonine-protein kinase At1g54610 119 214 - -
Gabi2829g00014 711 FunFam probable serine/threonine-protein kinase At1g54610 215 456 - -
Gabi2829g00014 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Gabi2829g00014 711 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Gabi2829g00014 711 Coils Coil 678 698 - -
Gabi2829g00014 711 Gene3D Phosphorylase Kinase; domain 1 119 214 - -
Gabi2829g00014 711 SMART serkin_6 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2829g00014 711 SUPERFAMILY Protein kinase-like (PK-like) 126 423 IPR011009 -
Gabi2829g00014 711 Gene3D Transferase(Phosphotransferase) domain 1 215 455 - -
Gabi2829g00014 711 PANTHER CELL DIVISION PROTEIN KINASE 130 422 - -
Gabi2829g00014 711 ProSiteProfiles Protein kinase domain profile. 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2829g00014 711 MobiDBLite consensus disorder prediction 12 27 - -
Gabi2829g00014 711 Pfam Protein kinase domain 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2829g00014 711 MobiDBLite consensus disorder prediction 437 520 - -
Gabi2829g00014 711 MobiDBLite consensus disorder prediction 437 470 - -
Gabi2829g00014 711 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2829g00014 Gabi-Chr2829 270828 278251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2829g00014 124 473 Core Cell Cycle Gene Families AT5G10270 51.639 2.14e-118 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi2829g00014 Pkinase 2.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2829g00014 - - gmx:100798022 1230.31