Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2829g00013 ATGGGTAGCATCTGTTGCAAGCCCTCTTCCATTGAAGATAGCAAGGAGAGCCCAAGGGAGCGTTTGTCAAGCAAGGCTTCATTGGACTCTCATGTGTCTAGGGGTACTTCATTGAGGAGGGAGGAAGCATATGGAGTGAAGGATAGATATGATGGTAATGATGTGAGAACTGCATTGATTGATAAGGTAGGGAATGGTTCTGTCCGGTCGCAAGGTGATAATGTTGAAAGGAAGAGGGAGAGAATGGAATATGTTTCTGCTCAACAACATCCAAGGGTTGGTAGTGTTCCCAAAGCCATGGAAGGGGAGCAGGTTGCAGCTGGATGGCCCTCCTGGCTTGCATCAGTGGCTGGAGAGGCTATCAAGGGATGGTTACCGCGCCGTGCAGATTCTTTTGAGAAGTTGGATAAAATTGGACAGGGAACTTATAGTAATGTTTACAGGGCTCGTGATCTTGAGCAAAAGAAAATTGTTGCTTTGAAAAAAGTAAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCAAATCCTGCGTAGGCTTAATCATCCAAACGTCATAAAACTGGAAGGCTTGGTTACGTCAAGGATGTCTTGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACTTGGCTGGGCTTGCGTCACATCCTGGTTTGAAGTTTACAGAAGCACAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCTGTGGTGTGCTGCACCGCGACATTAAGGGTTCCAACCTTTTGATTGACAATAATGGAGTCTTGAAGATTGCAGACTTTGGTTTGGCGAGTTTTTTCAACCCCAATCAAATTCAGCCTCTAACGAGCCGAGTTGTCACCCTTTGGTACCGGCCACCGGAGCTTTTACTTGGAGCCACGTACTATGGCACCACTGTAGATTTATGGAGTACAGGTTGCATACTTGCTGAGTTGTATGCTGGCAAACCTATAATGCCTGGAAGAACTGAGGTGGAGCAGTTACATAAGATTTTCAAACTTTGTGGTTCACCTTCAGAGGATTATTGGAGAAAATCAAAGTTGCCCCATGCAACAATATTTAAGCCTCAACAGCCCTATAGGCGTTGTGTTGCTGAAACATTCAAGGACTTTCCTACACCAGCATTAGCACTCATGGAGATCCTTTTGTCCGTAGATCCCGCTGATCGTGGAACTGCAGCATCCGCTTTGAACAGTGAGTTCTTCAGAACAAAGCCTCTACCTTGTGATCCTTTGATCTTGCCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAAGTACGGGATGAAGAAGCAAGAAGGTGGATAGCAGGAAGCAAGGGCCAGAGACATGACCTTGAAAGGAGAGGGATAAGAGAATCTCGAGCAGTCCCTGCACCTGATGCCAATGCTGAACTTGTCTTGTCAATGCAGAAGAGACAAGGTCAGGCTCATTCTAAAAGCAGAAGTGAGAAGTTTAACCCTCATCCAGAAGAAGCTTCTGGATTTCCCATTGATCCCCCTAGACCGTCACAAGCAGTAGATGTAGGTGTAGATCCTCAGGTACAGCAACATAAAAGAGCCTCCCATTCTGGTCCGCTGGCTCACCACGCTGCATGGGCTAAAACTGGAAAGAACCAGGATGACAATCCAAAGATTTCAGTTGGGGGCGACCTATCAAAAATCTCAGGCTTAGTTTCAGCCAGGTCTGGTTCATCACACATGGAGGCTTCAAAACTAATTAGCAGGTTCCCAGGATCATTCAAGGAGGCATATGATTCGACAATGCAACAGGATCAAAGAAAACATGTAAATAATAGCCTAGTAGGTGCTTCTCAAAAGGAAGAAGGGAGAGGCAGCCACAAAGACCCTGTTCTTGTTGGTTATGGGTCAAAGGGTCATAAAATTCATTATTCTGGTCCATTGCTAGTTCCATCAAGCAACATGGATCAGATGTTGAAAGACCATGACCGTGAAATTCAAGAGGCTGTTAGAAGAGCACGTTTGGACAAGGCAAGAATGAGAAGACTTCAAGCCGAAGGGAACCAGATAACCAATTCATTATTGGTTTCTGGTCGTTGA 2103 0.4532 MGSICCKPSSIEDSKESPRERLSSKASLDSHVSRGTSLRREEAYGVKDRYDGNDVRTALIDKVGNGSVRSQGDNVERKRERMEYVSAQQHPRVGSVPKAMEGEQVAAGWPSWLASVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIQILRRLNHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGVLKIADFGLASFFNPNQIQPLTSRVVTLWYRPPELLLGATYYGTTVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPTPALALMEILLSVDPADRGTAASALNSEFFRTKPLPCDPLILPKYPPSKEFDAKVRDEEARRWIAGSKGQRHDLERRGIRESRAVPAPDANAELVLSMQKRQGQAHSKSRSEKFNPHPEEASGFPIDPPRPSQAVDVGVDPQVQQHKRASHSGPLAHHAAWAKTGKNQDDNPKISVGGDLSKISGLVSARSGSSHMEASKLISRFPGSFKEAYDSTMQQDQRKHVNNSLVGASQKEEGRGSHKDPVLVGYGSKGHKIHYSGPLLVPSSNMDQMLKDHDREIQEAVRRARLDKARMRRLQAEGNQITNSLLVSGR 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2829g00013 700 Gene3D Transferase(Phosphotransferase) domain 1 215 454 - -
Gabi2829g00013 700 MobiDBLite consensus disorder prediction 455 520 - -
Gabi2829g00013 700 Coils Coil 667 687 - -
Gabi2829g00013 700 CDD STKc_CDK9_like 132 416 - -
Gabi2829g00013 700 FunFam probable serine/threonine-protein kinase At1g54610 215 456 - -
Gabi2829g00013 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Gabi2829g00013 700 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Gabi2829g00013 700 PANTHER CELL DIVISION PROTEIN KINASE 130 422 - -
Gabi2829g00013 700 Pfam Protein kinase domain 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2829g00013 700 SMART serkin_6 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2829g00013 700 SUPERFAMILY Protein kinase-like (PK-like) 126 423 IPR011009 -
Gabi2829g00013 700 Gene3D Phosphorylase Kinase; domain 1 119 214 - -
Gabi2829g00013 700 MobiDBLite consensus disorder prediction 455 469 - -
Gabi2829g00013 700 ProSiteProfiles Protein kinase domain profile. 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2829g00013 700 MobiDBLite consensus disorder prediction 12 27 - -
Gabi2829g00013 700 FunFam probable serine/threonine-protein kinase At1g54610 119 214 - -
Gabi2829g00013 700 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2829g00013 Gabi-Chr2829 270828 278251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2829g00013 124 472 Core Cell Cycle Gene Families AT5G10270 51.781 2.20e-118 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi2829g00013 Pkinase 2.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2829g00013 - - gmx:100798022 1198.34