Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2829g00005 ATGGAGGACAATAACAACAACAACAGCAACAGTAGCATCCTCAGAACTCATGTGTCACCATCATCACCACCACCTTCTCCTCCTATGGTTTCCTTCATTGCTGCTCTTGCAATTGCAATGCTAATCTTCATGTGCATCTATGTTTTTTCAACCATTGTTTCTGTGGCGATAGTTCTCACTCTTTGCATCATTAGTGTGTTCCTTTGCAGGGTTATCCATAACAGGCGTGGATTGGATACTGAATTGAGAGAAAGAACCAATTTTTATGCACAAACCCAACAAAATAACCAAAGGGTTGTGAGAATTTTTGATAAGCTTTTCTGGGTTGTTGAGGAAAGAGGAAACCAGAGGGTGATAGGATCTATTGTATGTTTTGGAAGCCAAGCAATGGCATCATCAAATAGCAATGAGTGTGCAATTTGCTTGGAGGATTTCAAGAAGGGAGAAGAATGCTTGGTTTTCTCTGTTTGTGGCCATACTTTTCATTTTGATTGTATCAACCATTGGATAGAGAAGAAACCCAGTTGTCCAATTTGTCGTCAATGTATCCCATCATCCATGGTAACAAAAACTAGAAGTATAGAATTCTTGGCCAATTTAGTTTAA 606 0.3911 MEDNNNNNSNSSILRTHVSPSSPPPSPPMVSFIAALAIAMLIFMCIYVFSTIVSVAIVLTLCIISVFLCRVIHNRRGLDTELRERTNFYAQTQQNNQRVVRIFDKLFWVVEERGNQRVIGSIVCFGSQAMASSNSNECAICLEDFKKGEECLVFSVCGHTFHFDCINHWIEKKPSCPICRQCIPSSMVTKTRSIEFLANLV 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2829g00005 201 SMART ring_2 138 179 IPR001841 -
Gabi2829g00005 201 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Gabi2829g00005 201 SUPERFAMILY RING/U-box 137 186 - -
Gabi2829g00005 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 186 IPR013083 -
Gabi2829g00005 201 CDD RING-H2_PA-TM-RING 137 180 - -
Gabi2829g00005 201 Pfam Ring finger domain 136 180 IPR001841 -
Gabi2829g00005 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 50 186 - -
Gabi2829g00005 201 MobiDBLite consensus disorder prediction 1 19 - -
Gabi2829g00005 201 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2829g00005 Gabi-Chr2829 164865 165470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2829g00005 129 181 C3H Transcription Factor Family AT2G17450 50.943 5.40e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2829g00005 - - lang:109363523 242.662