Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2829g00001 ATGGAATCTAAATATTTTGACTCTAATGGGGAATTCTCACTAAAGCAAAAATTGAAATCCAGTTCATCAGAGACAACAGCAATCTCTAGTGGTGACAATGGTTGCTTTGATTGCAATATTTGCCTGGAATCAGCACATGAACCTGTGGTGACTCTTTGCGGTCATCTGTACTGCTGGCCATGCATATACAAGTGGCTTCATGTCCAGAGCACCTCTGTTGAACCAGACCAGCAGCCAACATGCCCGGTTTGTAAAGCTGAGATCTCTCATACTTCATTAGTCCCCCTTTATGGCCGGGGAACATCGAATTCAGAATCTGAAGCCAAGAAACTCCAGTTGGGTTTGGGAATACCTCATAGGCCACCTCCTTACAACTTGAATGCTATGTTAACTTCTACTCGCGCATCAACATCACATCCTGGTCAGCAACTCCATCCAAGTTATTTCCAGTCACAATCACGGCCATTTCATTATCAGCAATACTTCCCTCACCTTTATGGAGGTTATGGTGCCAATGGATTACCTTATCTTGGGGGTCCTGCTGTGACTAGTTTTTTTAATCCTATGATTGGCATGTTTGGGGAGATGGTCTTGACAAGGATTTTTGGGGTCTCAGATGCAAATTTGTTTCCTTACCCTCATAATGGAAGTGCCAGTCCTAGAATGAGAAGGCAGGAGATGCAGATTGATAAGTCTCTAAACAGAGTTTCTGTCTTTCTTCTATGCTGTATCATTTTGTGTCTTCTCTTATTCTGA 756 0.4286 MESKYFDSNGEFSLKQKLKSSSSETTAISSGDNGCFDCNICLESAHEPVVTLCGHLYCWPCIYKWLHVQSTSVEPDQQPTCPVCKAEISHTSLVPLYGRGTSNSESEAKKLQLGLGIPHRPPPYNLNAMLTSTRASTSHPGQQLHPSYFQSQSRPFHYQQYFPHLYGGYGANGLPYLGGPAVTSFFNPMIGMFGEMVLTRIFGVSDANLFPYPHNGSASPRMRRQEMQIDKSLNRVSVFLLCCIILCLLLF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2829g00001 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 16 248 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gabi2829g00001 251 Pfam Zinc finger, C3HC4 type (RING finger) 38 84 IPR018957 GO:0046872
Gabi2829g00001 251 SMART ring_2 38 84 IPR001841 -
Gabi2829g00001 251 SUPERFAMILY RING/U-box 35 97 - -
Gabi2829g00001 251 CDD RING-HC_AtRMA-like 36 86 - -
Gabi2829g00001 251 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Gabi2829g00001 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 151 IPR013083 -
Gabi2829g00001 251 FunFam E3 ubiquitin-protein ligase RMA1H1 10 105 - -
Gabi2829g00001 251 ProSiteProfiles Zinc finger RING-type profile. 38 85 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2829g00001 Gabi-Chr2829 44689 47214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2829g00001 2 237 C3H Transcription Factor Family AT4G27470 46.667 9.00e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2829g00001 K10666 - gmx:100817526 375.17