Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2820g00021 ATGGCACCCAAGAATGACGAATCAACTAAGAAAACAAAGAATAAAGGAGCATGGAACCCTGAGGAAGATCAGAAGCTAGTCCAATGCATTGAAATTCACGGCGCAAAGAGGTGGAAAACTGTTGCAGCCAAATCAGGTCTAAATAGATGTGGAAAAAGTTGCAGGCTGAGATGGTTAAACTATCTGAGACCCAATATCAAGAGGGGCAACATATCCGATGAAGAAGAGGATTTGATTATTAGGCTTCATAGACTGCTGGGAAACAGGTGGTCTTTAATAGCTAAGAGGCTTCCAGGACGAACAGACAATGAAATTAAGAACTATTGGAATTCTTGTTTGAGCAAAAAAGTTAATCACAAAGAGGAAAAACCAGAAACTTCAACGTTAGAAGAGACACATATGACTCAGAATACTGGGGAAAGAGCAGTGGTAGAGAATCATGAGGCCATTGATAGAAGTGGGTACTCAGAAATTGACTTTGATGTGAACGAATTCTTCGACTTCTCAGCTGAAGGACCCTATGCGTTCGATTGGGTGAACAAGTATCTAGAACTTGATTGA 561 0.4064 MAPKNDESTKKTKNKGAWNPEEDQKLVQCIEIHGAKRWKTVAAKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNSCLSKKVNHKEEKPETSTLEETHMTQNTGERAVVENHEAIDRSGYSEIDFDVNEFFDFSAEGPYAFDWVNKYLELD 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2820g00021 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Gabi2820g00021 186 CDD SANT 72 110 IPR001005 -
Gabi2820g00021 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Gabi2820g00021 186 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Gabi2820g00021 186 FunFam MYB-related transcription factor 14 67 - -
Gabi2820g00021 186 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gabi2820g00021 186 Gene3D - 71 144 - -
Gabi2820g00021 186 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gabi2820g00021 186 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 8 145 - -
Gabi2820g00021 186 Gene3D - 15 67 - -
Gabi2820g00021 186 CDD SANT 17 62 IPR001005 -
Gabi2820g00021 186 SMART sant 14 64 IPR001005 -
Gabi2820g00021 186 SMART sant 67 115 IPR001005 -
Gabi2820g00021 186 FunFam Transcription factor TT2 71 141 - -
Gabi2820g00021 186 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gabi2820g00021 186 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2820g00021 Gabi-Chr2820 205466 206329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2820g00021 15 117 MYB Transcription Factor Family AT5G40330 66.990 5.03e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2820g00021 Myb_DNA-binding 4.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2820g00021 K09422 - gmx:100791381 298.13