Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2820g00020 ATGGAAGAAGAACAAGTTGTCCCTATTCAACCAACCACTTCCTACTCTTTCTCCATTATTGCCTCCACTTCTGACTTCTCAACTGAAGAAGAAGAAGTCAGTGTTGAGAATAACAATAACAAGAAGAAGAAGAAGAAGAAGGAGGAGAAGGAGAAGGAGGTGGTGGAGAGAGAGAGTGAGGGGAAGCATTCAATGTATCGCGGAGTACGCATGCGTCAATGGGGCAAATGGGTATCAGAAATAAGAGAGCCAAAGAAGAAGTCAAGAATTTGGCTTGGCACTTTTCCAACGCCAGAGATGGCGGCTCGAGCCCATGACGTCGCCGCTATCGCTATCAAAGGAACCTCCGCTTTCCTTAATTTCCCCGAATTAGCCGCAGTGCTTCCACGACCAGCCACCACTTCCCCCAAGGACATTCAAGCCGCAGCCGCCAGAGCAGCTTCAATCAATTACCACCAAGCCCAAGCCCAAGAATCATTAAATTCATCGTTAATGGGTGAGGATGATGCATTCTTCGACCTACCTGATCTCTTAAACAAGAGTGCAAGTAAGTTTCATTACTTCACGCCGAGCTTCTTGGCTGGACCCGAACATCTAGACTCGGGTTTCCGCCTGGAACACTCTTTCCCATGGGACTCTTCCTAA 645 0.4791 MEEEQVVPIQPTTSYSFSIIASTSDFSTEEEEVSVENNNNKKKKKKKEEKEKEVVERESEGKHSMYRGVRMRQWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAAIAIKGTSAFLNFPELAAVLPRPATTSPKDIQAAAARAASINYHQAQAQESLNSSLMGEDDAFFDLPDLLNKSASKFHYFTPSFLAGPEHLDSGFRLEHSFPWDSS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2820g00020 214 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Gabi2820g00020 214 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Gabi2820g00020 214 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Gabi2820g00020 214 Pfam AP2 domain 66 114 IPR001471 GO:0003700|GO:0006355
Gabi2820g00020 214 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Gabi2820g00020 214 MobiDBLite consensus disorder prediction 24 62 - -
Gabi2820g00020 214 Coils Coil 32 60 - -
Gabi2820g00020 214 MobiDBLite consensus disorder prediction 34 62 - -
Gabi2820g00020 214 FunFam Ethylene-responsive transcription factor 2 64 123 - -
Gabi2820g00020 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 42 181 - -
Gabi2820g00020 214 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Gabi2820g00020 214 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Gabi2820g00020 214 CDD AP2 64 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2820g00020 Gabi-Chr2820 195454 196137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2820g00020 44 149 AP2-EREBP Transcription Factor Family AT5G11590 69.811 5.63e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2820g00020 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2820g00020 - - gmx:100812293 200.29