Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2820g00016 ATGACCCGGCGATGCTCGCATTGCAGCCACAATGGCCATAATTCCAGGACCTGCCCCAACCGCGGAGTCAAGCTCTTCGGGGTCCGATTAACCGATGGGTCGATCCGGAAGAGTGCTAGCATGGGCAATCTCAGCCACTATTCCGGGTCGGGTTCAGCTTCCGGGGCTCACCATCCGGGTTCTCCCGATGACACTCCCGATCACGCTGCCGCCGATGGTTACGCCTCAGAAGACTTTGTTCCTGGCTCCTCTTCAACCTCTCGCGAACGAAAGAAGGGTGTCCCGTGGACTGAGGAGGAACATAGAATGTTTTTACTTGGATTGCAGAAGCTTGGCAAAGGTGATTGGCGTGGAATTGCACGGAATTATGTTGTATCAAGGACACCAACGCAAGTGGCCAGTCATGCTCAAAAATATTTCATCAGGCAAAGCAATGTGTCTAGACGGAGAAGACGTTCTAGTTTGTTTGATATTGTTGCAGATGAATCAGCCGACACGCCAATGGTACAGCAAGACTTCTTGCCAGTTAATCAGCTACAGGCTGAAACAGAAGGCAATAGCCCCTTGCATGCTCCTCCAGCCCTTGATGAAGAGTGCGAATCCATGGATTCCACAAACTCAAATGATGGGGAATCTGCCTCACTGAAGCCAGATAGCTCACAATCATCATACCCAGCGCTATATCATTCATATTATTCTCCTTTCTTCCCATTTCCTCTGCCCTATTGGTCAGGACACAGTCCAGAGCCTACTAAGAGGGAGACACATGAAGTGCTGAAGCCAACTGCTGTACATTCTAAAAGCCCAATCAATGTTGATGAACTGGTTGGCATGTCAAAACTGAGTTTAGGAGACTCTATTGGTGATTCTGGCCCCTCCTCTCTGTCCGTAAAACTCCTTGAAGGACCTTCTAGACAGTCAGCTTTTCATGCAACTCCAGCATGCACTAGTTCAAACATGAATGACAGTGCAATCCATGCAGTTTAA 987 0.4904 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYSGSGSASGAHHPGSPDDTPDHAAADGYASEDFVPGSSSTSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSNVSRRRRRSSLFDIVADESADTPMVQQDFLPVNQLQAETEGNSPLHAPPALDEECESMDSTNSNDGESASLKPDSSQSSYPALYHSYYSPFFPFPLPYWSGHSPEPTKRETHEVLKPTAVHSKSPINVDELVGMSKLSLGDSIGDSGPSSLSVKLLEGPSRQSAFHATPACTSSNMNDSAIHAV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2820g00016 328 FunFam transcription factor MYB1R1 94 145 - -
Gabi2820g00016 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 144 IPR017930 -
Gabi2820g00016 328 ProSiteProfiles Myb-like domain profile. 88 140 IPR001005 -
Gabi2820g00016 328 PANTHER TRANSCRIPTION FACTOR KUA1 3 267 - -
Gabi2820g00016 328 MobiDBLite consensus disorder prediction 41 55 - -
Gabi2820g00016 328 SUPERFAMILY Homeodomain-like 90 145 IPR009057 -
Gabi2820g00016 328 MobiDBLite consensus disorder prediction 41 96 - -
Gabi2820g00016 328 Gene3D - 94 146 - -
Gabi2820g00016 328 MobiDBLite consensus disorder prediction 183 220 - -
Gabi2820g00016 328 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2820g00016 328 SMART sant 92 142 IPR001005 -
Gabi2820g00016 328 CDD SANT 95 140 IPR001005 -
Gabi2820g00016 328 MobiDBLite consensus disorder prediction 205 220 - -
Gabi2820g00016 328 NCBIfam myb-like DNA-binding domain, SHAQKYF class 91 143 IPR006447 GO:0003677
Gabi2820g00016 328 ProSiteProfiles SANT domain profile. 96 144 IPR017884 -
Gabi2820g00016 328 Pfam Myb-like DNA-binding domain 95 140 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2820g00016 Gabi-Chr2820 142463 145534 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi2820g00016 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2820g00016 - - ccaj:109807943 549.666