Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2820g00014 ATGACGGTTGAAAAGGAAGATTTGGGTTTGAGTCTGAGCTTGAACTTCCCTCAGAATCCCCCAAAGCCTCTGCATCTCAATCTCATGTCGTCCTCCACTTATTCCTCTCCTCAAAAACCCTCTTGGAACCAGCCTTTCACTTCTTCAGATCGAGATTCGGAAACATGCAGAGGCGAAGGTCGATCTTTCCTGGGCGGAATCGATGTGAACCGGTTGCCTTCCGGGGTTGATTGTGAAGAGGAGGGTGGTGTTTCATCCCCAAACAGCACCGTTTCGAGCGTGAGCGGTAAGCGTAGCGAGAGAGAGAACAACGGGGAAGAACATGACATAGACAGAGCTTGTTCTAGAGGAATCAGCGATGAAGAAGACGGTGAAACCTCAAGGAAAAAACTTAGACTCTCCAAAGACCAGTCAATTATTCTCGAAGAGAGCTTCAAAGAGCACAACACTCTTAACCCCAAGCAAAAGATGGCGCTGGCAAAACAACTTGGCCTTCGAGCAAGACAAGTAGAGGTGTGGTTCCAGAACAGACGGGCAAGGACGAAGCTCAAGCAAACGGAGGTGGACTGTGAGTTCCTGAAAAGGTGCTGTGAGAATCTGACGGAGGAAAACAGGAGGTTGCAGAAGGAAGTTCATGAGCTTAGAACACTGAAACTTTCCCCGCAATTCTACATGCAGATGACCCCACCCACTACACTCACCATGTGCCCATCTTGTGAGCGTGTCGCTGTTCCACCCTCTGCCGTTGATACTGCCACGCGTCACCATCACATGGCCCCGACTCACCCTCGGCCCTTCCCCGTTGGCCCATGGGCCACCGCTGCTCCCATCCCTCACAGGCCCTTCGATACCCTCCGTCCCAGATCTTGA 870 0.5172 MTVEKEDLGLSLSLNFPQNPPKPLHLNLMSSSTYSSPQKPSWNQPFTSSDRDSETCRGEGRSFLGGIDVNRLPSGVDCEEEGGVSSPNSTVSSVSGKRSERENNGEEHDIDRACSRGISDEEDGETSRKKLRLSKDQSIILEESFKEHNTLNPKQKMALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVHELRTLKLSPQFYMQMTPPTTLTMCPSCERVAVPPSAVDTATRHHHMAPTHPRPFPVGPWATAAPIPHRPFDTLRPRS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2820g00014 289 MobiDBLite consensus disorder prediction 83 98 - -
Gabi2820g00014 289 Pfam Homeodomain 128 182 IPR001356 GO:0003677
Gabi2820g00014 289 FunFam Homeobox-leucine zipper protein 18 115 189 - -
Gabi2820g00014 289 Pfam HD-ZIP protein N terminus 3 102 IPR006712 GO:0005634
Gabi2820g00014 289 MobiDBLite consensus disorder prediction 1 130 - -
Gabi2820g00014 289 Gene3D - 132 182 - -
Gabi2820g00014 289 Pfam Homeobox associated leucine zipper 184 217 IPR003106 GO:0006355|GO:0043565
Gabi2820g00014 289 MobiDBLite consensus disorder prediction 99 130 - -
Gabi2820g00014 289 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Gabi2820g00014 289 CDD homeodomain 128 185 IPR001356 GO:0003677
Gabi2820g00014 289 PRINTS Lambda-repressor HTH signature 164 180 IPR000047 GO:0003677
Gabi2820g00014 289 PRINTS Lambda-repressor HTH signature 155 164 IPR000047 GO:0003677
Gabi2820g00014 289 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Gabi2820g00014 289 Coils Coil 183 217 - -
Gabi2820g00014 289 MobiDBLite consensus disorder prediction 12 51 - -
Gabi2820g00014 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 23 257 - -
Gabi2820g00014 289 SUPERFAMILY Homeodomain-like 118 185 IPR009057 -
Gabi2820g00014 289 SMART HOX_1 126 188 IPR001356 GO:0003677
Gabi2820g00014 289 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2820g00014 Gabi-Chr2820 112157 114269 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2820g00014 1 289 Homeobox Transcription Factor Family AT4G16780 64.000 7.03e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi2820g00014 HD-ZIP_N 2.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2820g00014 K09338 - gmx:100783851 461.07