Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2820g00013 ATGACGGTTGAAAAGGAAGATTTGGGTTTGAGTCTGAGCTTGAACTTCCCTCAGAATCCCCCAAAGCCTCTGCATCTCAATCTCATGTCGTCCTCCACTTATTCCTCTCCTCAAAAACCCTCTTGGAACCAGCCTTTCACTTCTTCAGGTGTAGGCGAAGGTCGATCTTTCCTGGGCGGAATCGATGTGAACCGGTTGCCTTCCGGGGTTGATTGTGAAGAGGAGGGTGGTGTTTCATCCCCAAACAGCACCGTTTCGAGCGTGAGCGGTAAGCGTAGCGAGAGAGAGAACAACGGGGAAGAACATGACATAGACAGAGCTTGTTCTAGAGGAATCAGCGATGAAGAAGACGGTGAAACCTCAAGGAAAAAACTTAGACTCTCCAAAGACCAGTCAATTATTCTCGAAGAGAGCTTCAAAGAGCACAACACTCTTAACCCCAAGCAAAAGATGGCGCTGGCAAAACAACTTGGCCTTCGAGCAAGACAAGTAGAGGTGTGGTTCCAGAACAGACGGGCAAGGACGAAGCTCAAGCAAACGGAGGTGGACTGTGAGTTCCTGAAAAGGTGCTGTGAGAATCTGACGGAGGAAAACAGGAGGTTGCAGAAGGAAGTTCATGAGCTTAGAACACTGAAACTTTCCCCGCAATTCTACATGCAGATGACCCCACCCACTACACTCACCATGTGCCCATCTTGTGAGCGTGTCGCTGTTCCACCCTCTGCCGTTGATACTGCCACGCGTCACCATCACATGGCCCCGACTCACCCTCGGCCCTTCCCCGTTGGCCCATGGGCCACCGCTGCTCCCATCCCTCACAGGCCCTTCGATACCCTCCGTCCCAGATCTTGA 852 0.5188 MTVEKEDLGLSLSLNFPQNPPKPLHLNLMSSSTYSSPQKPSWNQPFTSSGVGEGRSFLGGIDVNRLPSGVDCEEEGGVSSPNSTVSSVSGKRSERENNGEEHDIDRACSRGISDEEDGETSRKKLRLSKDQSIILEESFKEHNTLNPKQKMALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVHELRTLKLSPQFYMQMTPPTTLTMCPSCERVAVPPSAVDTATRHHHMAPTHPRPFPVGPWATAAPIPHRPFDTLRPRS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2820g00013 283 Pfam Homeodomain 122 176 IPR001356 GO:0003677
Gabi2820g00013 283 MobiDBLite consensus disorder prediction 93 124 - -
Gabi2820g00013 283 Pfam Homeobox associated leucine zipper 178 211 IPR003106 GO:0006355|GO:0043565
Gabi2820g00013 283 MobiDBLite consensus disorder prediction 1 54 - -
Gabi2820g00013 283 Coils Coil 177 211 - -
Gabi2820g00013 283 CDD bZIP 171 209 - -
Gabi2820g00013 283 CDD homeodomain 122 179 IPR001356 GO:0003677
Gabi2820g00013 283 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Gabi2820g00013 283 SMART halz 178 221 IPR003106 GO:0006355|GO:0043565
Gabi2820g00013 283 Pfam HD-ZIP protein N terminus 3 96 IPR006712 GO:0005634
Gabi2820g00013 283 SMART HOX_1 120 182 IPR001356 GO:0003677
Gabi2820g00013 283 FunFam Homeobox-leucine zipper protein 18 109 183 - -
Gabi2820g00013 283 MobiDBLite consensus disorder prediction 68 124 - -
Gabi2820g00013 283 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
Gabi2820g00013 283 MobiDBLite consensus disorder prediction 77 92 - -
Gabi2820g00013 283 Gene3D - 126 176 - -
Gabi2820g00013 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 22 251 - -
Gabi2820g00013 283 MobiDBLite consensus disorder prediction 12 51 - -
Gabi2820g00013 283 SUPERFAMILY Homeodomain-like 112 179 IPR009057 -
Gabi2820g00013 283 PRINTS Lambda-repressor HTH signature 149 158 IPR000047 GO:0003677
Gabi2820g00013 283 PRINTS Lambda-repressor HTH signature 158 174 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2820g00013 Gabi-Chr2820 112156 114271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2820g00013 1 283 Homeobox Transcription Factor Family AT5G47370 63.545 1.47e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi2820g00013 HD-ZIP_N 1.1e-28 No_clan