Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2820g00006 ATGGCAAACCCTGTTGAAGTTTCTGCACTCAATCGCATAAAATTGCATCTTCTAGGCGAACTCTCTCCCCTGCCACTCAGCAGTAGCATTTCCACCGTTGATATTACCCAAATCAATCTCTGGTTTAGATTTGATGAGCCAAACCCAACTTCATCTCAATCTGACTCCCTTTATTCCCAAGCTTCTAGTTCTGATTCATATGCCACAGTGGACAATTACTTAACTGAACTCCTTGATTTCCCAACCGATTCTATGGTTTCAACAGATAATCATTATCCCCAATTCGAATTTGAGTCCAAACCCCAAATAATCGAAAGCCCAAAAGCCCAAAGTCAAACATCACAGTTAGCCATCAGTTTTTCAAACACACGGGCGGCAACATCGGAATCCCTAGAGAAGAAACCTCAATCGAATCGGAAGCCATCGTTGCAAATCTCTGTCCCGAAGAAGACCGAGTGGATCCAATTCGGAGATTCGAAGGTTGCGGAAGAAGTGGTGACTGAACCTGAAGAGAAGAAGCACTACAGAGGGGTCCGACAGAGACCGTGGGGCAAGTACGCTGCGGAGATCCGAGACCCGAACAAGCGCGGATCCAGGGTGTGGCTAGGAACATTCGAAACGGCTATCGAAGCCGCCAAAGCCTACGACAGAGCCGCGTTTAAGCTTCGAGGCTCTAAAGCCATCCTCAACTTCCCCCTCGAAGCCGGCGCAGATGAACGAAAACGCCGCCGGGAAGAGGAGGAGGCGGAAGTCGTGAAGAGGAAAAAGACAGCGGAATCGGACATTAGCCATATAAGGAATACTCCGTTAACGCCGTCTAGTTGGATAGGGTTTTGGGACACTGATGTAAAGGGAATTTTCCCTTTGCCGCCCTTGTCACCGTTAACTCCATTAACGCTGTCACAGCTTATGGTTGTGTGA 921 0.4832 MANPVEVSALNRIKLHLLGELSPLPLSSSISTVDITQINLWFRFDEPNPTSSQSDSLYSQASSSDSYATVDNYLTELLDFPTDSMVSTDNHYPQFEFESKPQIIESPKAQSQTSQLAISFSNTRAATSESLEKKPQSNRKPSLQISVPKKTEWIQFGDSKVAEEVVTEPEEKKHYRGVRQRPWGKYAAEIRDPNKRGSRVWLGTFETAIEAAKAYDRAAFKLRGSKAILNFPLEAGADERKRRREEEEAEVVKRKKTAESDISHIRNTPLTPSSWIGFWDTDVKGIFPLPPLSPLTPLTLSQLMVV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2820g00006 306 PANTHER DNA-BINDING DOMAIN 123 246 IPR044808 GO:0003700|GO:0009873
Gabi2820g00006 306 PRINTS Ethylene responsive element binding protein signature 214 234 IPR001471 GO:0003700|GO:0006355
Gabi2820g00006 306 PRINTS Ethylene responsive element binding protein signature 175 186 IPR001471 GO:0003700|GO:0006355
Gabi2820g00006 306 SUPERFAMILY DNA-binding domain 174 233 IPR016177 GO:0003677
Gabi2820g00006 306 SMART rav1_2 174 238 IPR001471 GO:0003700|GO:0006355
Gabi2820g00006 306 Gene3D AP2/ERF domain 173 234 IPR036955 GO:0003700|GO:0006355
Gabi2820g00006 306 CDD AP2 173 232 IPR001471 GO:0003700|GO:0006355
Gabi2820g00006 306 Pfam AP2 domain 174 224 IPR001471 GO:0003700|GO:0006355
Gabi2820g00006 306 ProSiteProfiles AP2/ERF domain profile. 174 232 IPR001471 GO:0003700|GO:0006355
Gabi2820g00006 306 FunFam Ethylene-responsive transcription factor 2 173 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2820g00006 Gabi-Chr2820 68353 69439 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2820g00006 139 306 AP2-EREBP Transcription Factor Family AT5G47230 58.696 7.11e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi2820g00006 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2820g00006 K09286 - gmx:100808173 298.901