Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2820g00004 ATGAGTTTAACCAGTACCTATGAGTCCGATTTGGCCCTTTTGGATTCCATTCGCCGCCACTTGCTCGGCGATTCCGATGTATGTAGATTCGGAGCCCCGACTGCTAGTTCGGGTAGCGCTCCAGTTTACTGTCGGAGCTCCAGTTTCAGCAACTTGTACCCGTGCTTGAGTGATAATTGGGGCGAATTGCCACTCAAGGAAGACGATTCAGAGGACATGGTACTTTACGGTGTACTTCGCGATGCAGTTAACGTTGGGTGGGTCCCATCTCTCGACGCAGGGTCACCGGAGAGCTTCACGTCGGGTTTCCTGCCGACGGTGACAGTCAAACCTGAGCCGGACATTTTTCCGGCAGTGAACAGTCCACCGGAGCCCGTCGTTGTCCCTCCGATGATTCCGCAAGAGAAGTCTGCGCCGGCGGCAGTTCTGGCAAAGGGGAAACATTACCGCGGCGTGCGGCGACGGCCGTGGGGAAAATTTGCGGCGGAGATCCGTGACCCGGCAAAGAACGGGGCTCGGGTTTGGCTGGGAACATTCGAAACGGCTGAGGACGCCGCGCTGGCTTACGATCGAGCCGCGTACCGGATGCGCGGGTCACGGGCTCTTCTGAATTTTCCGCTTCGGGTCAACTCAGATGAGCCAGACCCGGTTCGAGTGACGTCGAAGCGATCCTCACCGGAGCCTTCTTCGTCGTCGTCGGAAAGTGGGTCGTCGGCGAAGCGGAAGAAAAAGATGGTGGGGCCAACTGTGCCTGTGGTGACAGTAGAAGGTGGATAA 777 0.5753 MSLTSTYESDLALLDSIRRHLLGDSDVCRFGAPTASSGSAPVYCRSSSFSNLYPCLSDNWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLDAGSPESFTSGFLPTVTVKPEPDIFPAVNSPPEPVVVPPMIPQEKSAPAAVLAKGKHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSDEPDPVRVTSKRSSPEPSSSSSESGSSAKRKKKMVGPTVPVVTVEGG 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2820g00004 258 Pfam AP2 domain 148 198 IPR001471 GO:0003700|GO:0006355
Gabi2820g00004 258 MobiDBLite consensus disorder prediction 222 236 - -
Gabi2820g00004 258 FunFam Ethylene-responsive transcription factor 2 147 207 - -
Gabi2820g00004 258 PANTHER DNA-BINDING DOMAIN 137 238 IPR044808 GO:0003700|GO:0009873
Gabi2820g00004 258 SMART rav1_2 148 212 IPR001471 GO:0003700|GO:0006355
Gabi2820g00004 258 MobiDBLite consensus disorder prediction 209 258 - -
Gabi2820g00004 258 Gene3D AP2/ERF domain 147 209 IPR036955 GO:0003700|GO:0006355
Gabi2820g00004 258 SUPERFAMILY DNA-binding domain 148 208 IPR016177 GO:0003677
Gabi2820g00004 258 CDD AP2 147 206 IPR001471 GO:0003700|GO:0006355
Gabi2820g00004 258 PRINTS Ethylene responsive element binding protein signature 172 188 IPR001471 GO:0003700|GO:0006355
Gabi2820g00004 258 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Gabi2820g00004 258 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2820g00004 Gabi-Chr2820 52007 58751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2820g00004 1 247 AP2-EREBP Transcription Factor Family AT4G17500 57.529 1.58e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2820g00004 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2820g00004 K09286 - gmx:100819649 346.28