LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2820g00003	ATGGCTGCACTGACACTTCTTATCCTCACACTTGTCTTTCTTCAAGTTTTGTTAGTTGTTGCTAACGTTAACTTGAATTCAACACTTACCACCAATGACAATGATGCATGGCTTTCACCTTTGGGTGATTTTGCTTTCGGGTTTCGTCCACTTAACGACACAAGCACGAGTCTCTTCATGGTTGCCATTTGGTATAACAAAATTCCCGACATGACCGTTGTTTGGAATGCAAAAGCAGCAGATGATAATAACGTTGTAAAAGCACCAACAGGGTCACAGGTTCAGCTCACATCACAAGGACTAACTCTCACAAATCCTAACGGGGAATCCATATGGACGGCACAACCAAACGCCGTTGTTTCGAATGGAACTATGCTTGACACTGGCAACTTTGTTCTCTTAAACAACAATTCTACTAGTGTGTGGGAAAGTTTCAAGAATCCCACAGACACGTTGTTGCCTAACCAATCTCTGGAGACAGATGGCAAGCTAACTTGTCGATTCACAGAGACCAATTACACAAGAGGAAGGTTCCAACTTTATTTTCAAAATGGTGATGTTTTTCTGAAACCCCTTTCTTGGCCTTCAGAATTTCGTTACGACCCTTATTATAAAATTGATGCTGCTGCCTCTGCTTCACAATTAGTGTTCGATGAATCTGGGAATATTTATGCAGAGACAACGAATGGAACTAGATTCCAACCTCAAAGTCCAAAATGGGTTGACTTAACTCTTGATCCTAAGGAGAATTACTACAGAGCAACACTTGACTTCCATGGAGTTTTCACGCAGTATGCTCATTCAAGGAACTCCAGTGCCCAACAAGGTTGGTCAATTTTGAGGTATGTTCCTAGCAACATATGCAATTCAATAAACAATGAAATGGGTAGTGGTACCTGTTGGTATAATAGCATTTGCTCCATGGAAAATCAGAGGCCTACTTGCAAATGCCCATATGGGTATTCATTGGTAGATCCAAATAATGCATTTGGTGGGTGCCAACCCAATTTCACCCTCGTTTGTGGAGCCGATGTTGAAGGGTTGCAAGCACGGCCTGAAGAACTATATGACTTGCCCATATCAATAGGCATGAATTTTCCTTTTGGAGATTATGAAAGGATAGAACCTTATACTCAAGATGAGTGCAAACAATCTTGCTTGCACGATTGCATGTGTGCTGTTGCCATTTTAGGCGGTAGCACTTGTTGGAAGAAAAGATTACCCCTTATTAATGGAAGAGTGGATGCAGGCAATCAATTGGTCTTTATCAAAACAAGAATTACTCCTCTGAGCAAATTAGATCCTGGTGCAAAACAGGAACTTCCCACTGGTCCTGATTCAAACAATGAAGATCGAGCTAAGCCAATTCTTCGAGGGTCACTTATTGGCTCCCTTGTTCTTAACAGTATACTCCTTGCAACTGTTGTTTTGATTCTTCTCTTGAAGCCAAAAAGGATTGTCCAAGCTTCAAGTCTTTTGGAAACAAATTTACATTCATTTACTTATGAAGCACTGAAAGTAGCCACGTGGGGCTTTAAGGAAGAACTAGGCAGGGGTTCCTTTGGCATTGTTTACAAAGGCAAAGTTGAAGCAGCGTCTTGTGATGTGGTTGCCGTCAAGAAATTGGACAGATTGGCACAAGAACGAGAGAAGGAATTTAAGACTGAGTTAAGTGCTATTGGTAAAACCTGCCACAAAAATCTGGTAAGGTTGATTGGATTTTGTGACGAGGGAATCCATAGGCTTATTGTCTATGAGTTCATGAGCAATGGTACTCTTGCAGATATCCTGTTTGGACAAGCCAATCCCATTTGGAATCTAAGGGTTAGGTTTGCTTTGGATATTGCAAGAGGGTTGGTGTACTTACACGAAGAGTGTGACACTCCCATCATTCATTGTGATATAAAACCTCAAAATATACTCATAGATGAGCATTTCACTGCAAAGATCTCTGACTTTGGGTTGGCCAAGTTGTTGTTGTCTGACCAAAGTAGAACCAATACCATGATTCGAGGAACTCGAGGATATGTGGCTCCTGAATGGTTCAAGAATGTTCCTGTAACGGTTAAAGTGGATGTTTACAGCTTTGGTGTCATGTTATTGGAAATCATTTGCTGCAGAAAAAGTGTGCAACTAACAGAGTCCGGGGAGGAGGAGAGTGCAATATTGATAGATTGGGCTTATGATTGCTATATTGAAAAGAGAATAGATGTTCTGGTGGAGAACGATCCCGAGGCGTTGGCTGACATTGGCAGGTTACAGAGTTGGATAAAGATAGCAATCTGGTGCATTCAAGAGCATCATGAAATGAGGCCAACAATGGGAAAGGTCATGCAAATGCTCCAAGGTTCGGTTGAAGTCCCTAAACCACCATTGCCTTCCTCCTTCAATTCAATTTAG	2400	0.4158	MAALTLLILTLVFLQVLLVVANVNLNSTLTTNDNDAWLSPLGDFAFGFRPLNDTSTSLFMVAIWYNKIPDMTVVWNAKAADDNNVVKAPTGSQVQLTSQGLTLTNPNGESIWTAQPNAVVSNGTMLDTGNFVLLNNNSTSVWESFKNPTDTLLPNQSLETDGKLTCRFTETNYTRGRFQLYFQNGDVFLKPLSWPSEFRYDPYYKIDAAASASQLVFDESGNIYAETTNGTRFQPQSPKWVDLTLDPKENYYRATLDFHGVFTQYAHSRNSSAQQGWSILRYVPSNICNSINNEMGSGTCWYNSICSMENQRPTCKCPYGYSLVDPNNAFGGCQPNFTLVCGADVEGLQARPEELYDLPISIGMNFPFGDYERIEPYTQDECKQSCLHDCMCAVAILGGSTCWKKRLPLINGRVDAGNQLVFIKTRITPLSKLDPGAKQELPTGPDSNNEDRAKPILRGSLIGSLVLNSILLATVVLILLLKPKRIVQASSLLETNLHSFTYEALKVATWGFKEELGRGSFGIVYKGKVEAASCDVVAVKKLDRLAQEREKEFKTELSAIGKTCHKNLVRLIGFCDEGIHRLIVYEFMSNGTLADILFGQANPIWNLRVRFALDIARGLVYLHEECDTPIIHCDIKPQNILIDEHFTAKISDFGLAKLLLSDQSRTNTMIRGTRGYVAPEWFKNVPVTVKVDVYSFGVMLLEIICCRKSVQLTESGEEESAILIDWAYDCYIEKRIDVLVENDPEALADIGRLQSWIKIAIWCIQEHHEMRPTMGKVMQMLQGSVEVPKPPLPSSFNSI	799

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2820g00003	799	CDD	STKc_IRAK	516	783	-	-
	Gabi2820g00003	799	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	28	793	-	-
	Gabi2820g00003	799	FunFam	S-receptor-like serine/threonine-protein kinase	482	587	-	-
	Gabi2820g00003	799	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	588	789	-	-
	Gabi2820g00003	799	Gene3D	Phosphorylase Kinase; domain 1	478	587	-	-
	Gabi2820g00003	799	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	630	642	IPR008271	GO:0004672\|GO:0006468
	Gabi2820g00003	799	Pfam	D-mannose binding lectin	72	162	IPR001480	-
	Gabi2820g00003	799	SMART	serkin_6	510	781	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2820g00003	799	Gene3D	Transferase(Phosphotransferase) domain 1	588	788	-	-
	Gabi2820g00003	799	ProSitePatterns	Protein kinases ATP-binding region signature.	516	541	IPR017441	GO:0005524
	Gabi2820g00003	799	PIRSF	SRK	1	799	IPR024171	GO:0004674
	Gabi2820g00003	799	Gene3D	-	18	146	IPR036426	-
	Gabi2820g00003	799	Pfam	Protein kinase domain	513	779	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2820g00003	799	SUPERFAMILY	alpha-D-mannose-specific plant lectins	59	186	IPR036426	-
	Gabi2820g00003	799	ProSiteProfiles	Bulb-type lectin domain profile.	22	146	IPR001480	-
	Gabi2820g00003	799	SUPERFAMILY	Protein kinase-like (PK-like)	493	781	IPR011009	-
	Gabi2820g00003	799	ProSiteProfiles	Protein kinase domain profile.	510	792	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2820g00003	799	SMART	blect_4	28	148	IPR001480	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2820g00003	Gabi-Chr2820	27483	30710	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2820g00003	445	787	Receptor kinase-like Gene Family	AT1G56120	38.968	7.00e-64	228

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Gabi2820g00003		Pkinase	5.1e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2820g00003	-		-	gmx:100775269	1117.45