Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2820g00001 ATGGCTGCCGTAACGCCTCTTATTCTTCTTACACTTGTCTTTCTTCAAGTTTTGTTAGTTTTTGCAAACGTTAATCTGAGTTCAACACTCACCACTCATGATAATGATGCGTGGCTATCACCTTCGGGTGACTTTGGTTTCGGGTTTCGCCAGCTTAACGACACAAGTACAAACCTCTTCATGGTTTCCATCTGGTATAACAAAACACCCGACAAGACCGTTGTTTGGAATGCAAAAGCAGATGGTGATGTTGTAAAAGCACCAACAGGATCACAGATTCAGCTCACATCAAAAGGGCTCACGCTCACAATTCCTAACGGGAAATCCATATGGACGGCACAACCAAACGCCCTTGTTTCCCACGGAGCTATGCTTGACACTGGCAACTTTGTTCTCTTGAACGACAATTCTACTAATGTGTGGGAAAGTTTCAAGAATCCCACAGACACGTTGTTGCCTGACCAATCTCTGGAGAGAGATGGCAAGCTAACTTCTCGATTCACAGAGACCAATTACACAAGAGGAAGGTTCCAACTTTATTTTCAGGATGGTGATGTCTTTCTGAGCCCCCTTGCTTGGCCTACTGATTTTCGTTATGACTCTTATTATAAAATTGATGCCGCTGCCTCTGCTTCACGATTAGTATTCAATGAATCGGGGGATATTTATGTAGAGACAACAAATGGGACTAGAATACAACATCGAGGTCAACAATGGTTTAACATAACTCTCGATCCTAATGTGTATTACTACAGAGCGACACTTGATTTCCATGGAGTTTTCACCCATTATGCTTATCCAAGGAGCTCCAGTGCTGAACAAGGCTGGACAATTTTGAGGTATGTTCCTTATAACATATGCATTGCAATATTTAATGACATGGGTAGCGGTTGCTGTGGCTATAATAGCTATTGCTCAAAGGAAAATCAGAGGCCTACTTGCAAATGTCCTGATGGGTATTCGCTAATAGATCCTAGTAATCAATTTGGTGGATGCCAACCCAATTTCAAACTTGGTTGTGGAGCAGATAATGATGGAGGAGGAGGATCGCAAGCACAGCCAGAAGAGCTATATAATATTACTATTCTTAGATATGTGGATTGGCCTCTATCAGATTATGAAAAGTTACAACCTTCCTCTCAACAGGACTGCCAACAATCTTGCTTGCACGATTGCATGTGTGCTGTTGCCATTTTTAGGGATCAAACATGTTGGAAAAAAAGATTGCCTCTCTCTAATGGAAGATCAAACAGTGGCAGTCACTTGGTCCTTATGAAAACAAGAATTGCTCCTTTGGGTAACCTTGGTCCTGCCAATAGTCCTAACCCAAAGAAAGAAGATCCAGCTAAGCCAGTTCTTGGTTTACTTATTGGCTCCGTTGTCAGCAACAGTCTACTCCTGGCTACTGTTGTTTTGATTCTTCTCTTGAAGCCCAGAAGGATTGTCCAAGCTTCAAGTAATTTGGAATCGAGTTTACATTCATTTACTTATGAAGCATTGAAAGAAGCCACATGGGATTTTAAGGAAGAACTAGGCAGGGGTTCCTTTGGCATTGTTTACAAAGGCAAACTAGAAGCGGCGTCTTACAATGTGGTTGCCGTCAAGAAATTGGACAGATTGGCACAAGAACAAGAGAAGGAATTTAAGACCGAGTTAAGTGCTATTGGTAAAACCTGCCACAAAAATCTGGTACGATTGATTGGATTTTGTGACGCGGGACTCCATAGGCTAATTGTCTACGAGTTTATGAGCAATGGTTCTCTTGCAAATATCCTATTTGGACAACCCAAACCCATTTGGAATCTAAGGGTTAAGTTTGCATTGGATATTGCAAGAGGGTTGGTGTACTTACACGAAGAGTGTGACACTCCCATCATTCATTGCGATATTAAACCTCAAAATATACTCATAGATGAACATTTCACTGCAAAGATCTCTGACTTTGGGTTGGCCAAGTTGTTGTTGTCCGACCAAAGTAGAACCAATACCGTGATCCGAGGAACTCGAGGATATGTGGCTCCTGAATGGTTCAAGTATGTTCCTGTTAAAGTGGATGTTTACAGCTTTGGTGTCATGTTGTTGGAAATCATTTGCTGCAGAAAAAGTGTGCAGCTGATGGACTCCGGGGAGGAAGAGAGAGCAATATTAACAGATTGGGCTTATGATTGCTATATAGAAAAAAAAATAGATGCTCTAGTGGAGAATGATCATGAGGCATTGGCTGACATTGGCAGGTTACTGAATTGGGTAAAGATAGCAATTTGGTGCATTCAAGAGCATCATGAAAGGAGACCAACAATGGGAAAGGTCATGCAAATGCTACAAGGTTTGGTTGAAGTTACTAACCCACCATCGCCTTCTTCCTTCACTTCAATTTCTTGA 2382 0.4177 MAAVTPLILLTLVFLQVLLVFANVNLSSTLTTHDNDAWLSPSGDFGFGFRQLNDTSTNLFMVSIWYNKTPDKTVVWNAKADGDVVKAPTGSQIQLTSKGLTLTIPNGKSIWTAQPNALVSHGAMLDTGNFVLLNDNSTNVWESFKNPTDTLLPDQSLERDGKLTSRFTETNYTRGRFQLYFQDGDVFLSPLAWPTDFRYDSYYKIDAAASASRLVFNESGDIYVETTNGTRIQHRGQQWFNITLDPNVYYYRATLDFHGVFTHYAYPRSSSAEQGWTILRYVPYNICIAIFNDMGSGCCGYNSYCSKENQRPTCKCPDGYSLIDPSNQFGGCQPNFKLGCGADNDGGGGSQAQPEELYNITILRYVDWPLSDYEKLQPSSQQDCQQSCLHDCMCAVAIFRDQTCWKKRLPLSNGRSNSGSHLVLMKTRIAPLGNLGPANSPNPKKEDPAKPVLGLLIGSVVSNSLLLATVVLILLLKPRRIVQASSNLESSLHSFTYEALKEATWDFKEELGRGSFGIVYKGKLEAASYNVVAVKKLDRLAQEQEKEFKTELSAIGKTCHKNLVRLIGFCDAGLHRLIVYEFMSNGSLANILFGQPKPIWNLRVKFALDIARGLVYLHEECDTPIIHCDIKPQNILIDEHFTAKISDFGLAKLLLSDQSRTNTVIRGTRGYVAPEWFKYVPVKVDVYSFGVMLLEIICCRKSVQLMDSGEEERAILTDWAYDCYIEKKIDALVENDHEALADIGRLLNWVKIAIWCIQEHHERRPTMGKVMQMLQGLVEVTNPPSPSSFTSIS 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2820g00001 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Gabi2820g00001 793 CDD STKc_IRAK 511 777 - -
Gabi2820g00001 793 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 782 - -
Gabi2820g00001 793 ProSiteProfiles Protein kinase domain profile. 505 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2820g00001 793 ProSitePatterns Protein kinases ATP-binding region signature. 511 536 IPR017441 GO:0005524
Gabi2820g00001 793 Gene3D Phosphorylase Kinase; domain 1 475 582 - -
Gabi2820g00001 793 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 29 786 - -
Gabi2820g00001 793 SUPERFAMILY Protein kinase-like (PK-like) 488 774 IPR011009 -
Gabi2820g00001 793 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 186 IPR036426 -
Gabi2820g00001 793 Pfam D-mannose binding lectin 73 162 IPR001480 -
Gabi2820g00001 793 Pfam Protein kinase domain 507 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2820g00001 793 FunFam Serine/threonine-protein kinase 148 290 - -
Gabi2820g00001 793 Gene3D Transferase(Phosphotransferase) domain 1 583 781 - -
Gabi2820g00001 793 Gene3D - 26 180 - -
Gabi2820g00001 793 PIRSF SRK 1 793 IPR024171 GO:0004674
Gabi2820g00001 793 SMART blect_4 29 147 IPR001480 -
Gabi2820g00001 793 ProSiteProfiles Bulb-type lectin domain profile. 23 145 IPR001480 -
Gabi2820g00001 793 SMART serkin_6 505 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2820g00001 793 FunFam S-receptor-like serine/threonine-protein kinase 477 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2820g00001 Gabi-Chr2820 11855 14392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2820g00001 453 779 Receptor kinase-like Gene Family AT5G45780 38.988 6.23e-63 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi2820g00001 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2820g00001 - - lja:Lj2g3v1989170.1 1130.55