Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2819g00027 ATGGTTACAGGAGGAAGGAACAGAGGTCGTGTGTGTGTCATCAGGAACAGGGAGAAGCACAAGGGTAGTTTTGAGACCATCCGCGTTCAGGATGCAACTGGTCATGAGTTTGCAACTCGAATGGGACACTCAGTTGACACCCACCGTTTAAGCTTAAAGCTGCAACCCTCGTCTTCTTCTCCGCACACGATAGCCGCGCCATCACCGGTTGCTCCACCACTTGCGCCGGCCTCTTCTTCGTTCTCTCATGATATTCTTTTGGTTTTGAATTTTTGGCTAGCAAGTGCAATAATTGATTGTAAGAATGGATTTAATTTGCAAATTGGGAAATGCTTTTCCATGTATTGCAATTGTGGGTTCATAATAATTCGACAAGTCTTAATGAAAGGGATACAATCTTATTTCAAACGTCAAAGATGCACAAATACAGAACCTGAATCCAATGAACCTCAGAGACAAAATGTTTCAATTGTGGAAAATTCTCATCAATCTCAAAGACAAAGTGTACCACCACAAGCATCTCAATTTCAAAGTTTTCAATCACCACCTCAAGCAAAAGTTAATATAGAGAATCTTGAAGCGGATCCGGGAAAAAGACCTTCAATTTGTTCAACGACATCAAATCCTATAGAGAGAGAGGATATTCGGAGAGCTTATTTGCTCAAGGGTCCAACTCAACCAATTCTTAAACCATTTCCTCAAACGAAAATGTTTGGAAAAATGCGTAGATTCAATCCTAAGTGGTATGAAGAATTTGGTTCTTGGTTGGAGTATAGTGTATCACGAGATGCATGTTTTTGCTTGTATTGTTATCTATTTGATATGGAGGTTGGAGGTAGTGGTTCGACGAAGGAAGCATTTGTCGGTGTGGGGTTCAAAAATTGGCAGAAGAAGGATAGAATCAAAGTTCATGTTGGAGGTCATATGAGTGTTCACAATAGATGTTATCAAGCTTGTCAAGATTTGATGAAGCAAAAGCAACATATTGATATTGCATTTTCAAATATTTCTGAACAACAAAGAATTGATTATCGTATTCGGCTGAAAGCTTCTTTAGATTGTGCTAGATACTTACTACGAAATGGTCAGCCTTTTCGGGGACATGATGAATCTGAAAGTTCAAATCAACAAGGTTTATTTCTTGAAACTCTAAAGTTTTATACTAAGCCAAATGAGGAGATGAGTCATGTGGTTTTGCAAAATGCTCCCGATAATCACAAAATGACTTCACCAAAAATTCAGAAAGATCTTGCTCAAGCTTGTGCTGATTTGACTGTTAAAGCAATAATTAGTTACCTTGACGATGATTACTTTTCCTTGCTAGTTGATGAAGCCCGTGATGTTGCAATTAAAGAACAAATGACAGTTGTACTTCGGTATGTAAACAAAAAGGGGTCCATTGTTGAATGTTTTATTGGCATAATTCATGTTTCAGATACTACTGCACAATCACTAAAACATGCGATTGATGGGTTGTTTTCTAAACTCGGTTTAAGTTTGTCTAAATGTCGCGGTCAAGGCTATGATGGTGCTAGTAATATGCGGGGTGAATTCAAAGGGCTTAAGAGTTTGATTTTGGCAGACAACAAATCTGCATTCTACATTCATTGTTTTGCTCATCAGTTACAATTGGCACTTGTGAAGGTTGCAAAACATTATAAGAAGATTCAAGAATTTTTTGACATGCTTCAAAAGATGGCTACCGTTGTGGGGGGTTCATGCAAGCGGAAAGAAATTCTTCTAATGAATCAATATGAGCAAATAGTTGAAAGAATTGCTCGCGGTGAAATACTAACTGGAAAAGGTTTGAATCAAGAGACAACCTTAAAGCGACCTGGAGACACTCGTTGGGGTTCCCATTTTGGTACAGTTACAAGTGTTATCTCATTATTTTCTCCAATAATTTCCTTGATGAAAATTATTGAAGACGAGCCTAAGAATGATGCTGCAAGAACTGATGCGGGTTGCATTTTGTATGCCATGGAGGATTTTGAGTTTGCATTCTTGTTGCATCTTATGAAACTTATCTTGGGAATTTCTTATGAGTTGTCACAAGCACTACAAAGAAAAGATCAAGACCTTTTAAATGCAATTGGTTTAGTAAAGGTAGTCAAGTCTCGCTTACAAGAGGTGAGAGATAATGGTTTTGATGAATTGCTTCAAGAAACGAACATATTTGCCAAAAAATATGATATTGACATTCCAAATATGGAAGATGTTTATTGTCCTAAAGGGAGATCAAGACGGAGATTGGAATCATTCACATTCTTGCACTACTTTAAGGTGGAGTTATTTAATAGAGTTATAGATACTCAAGTTCAAGAGTTGGATGATCGATTTGATAATGTCAATACCAAGTTGCTTGAGTGTTTGAGTTGTCTTGATCCTCGTGATTCATTTGCTACTTTTAACAAAGAAAAGTTGATTGAGTTTGCTAGATTTTATCCTTTGGAGTTTGATGAGCTTGCAGATATTCCTTTTCTTTCTTCAAGTCTGAGTAATTTTATTGTTGATGTAAGAGCTGATTCTGATTTTGTCAATTTGAAAAGAATTTCTGAACTTGCTTTGAAGATGGTTGAGAAGGGAAAAGATATTGTTTATCCATTGGTCTATTTATTGATAAAGTTGGCACTCCTTCTACCAGTAGCAACTGCTAGTGTTGAGCGAGTTTTTTCTGCAATGACTTTTGTTAAGGATAAGCTGCGCAATCGGATAAGTGATGATTGGTTTAACGGATGCATGCTAACTTATGTTGAACGTGATATATTTGATAAGATTGATGATGAAGATATAATGCAATATTTTCAAGCAATGAAGAATCGAAGAATGCTTTTGTGA 2838 0.3696 MVTGGRNRGRVCVIRNREKHKGSFETIRVQDATGHEFATRMGHSVDTHRLSLKLQPSSSSPHTIAAPSPVAPPLAPASSSFSHDILLVLNFWLASAIIDCKNGFNLQIGKCFSMYCNCGFIIIRQVLMKGIQSYFKRQRCTNTEPESNEPQRQNVSIVENSHQSQRQSVPPQASQFQSFQSPPQAKVNIENLEADPGKRPSICSTTSNPIEREDIRRAYLLKGPTQPILKPFPQTKMFGKMRRFNPKWYEEFGSWLEYSVSRDACFCLYCYLFDMEVGGSGSTKEAFVGVGFKNWQKKDRIKVHVGGHMSVHNRCYQACQDLMKQKQHIDIAFSNISEQQRIDYRIRLKASLDCARYLLRNGQPFRGHDESESSNQQGLFLETLKFYTKPNEEMSHVVLQNAPDNHKMTSPKIQKDLAQACADLTVKAIISYLDDDYFSLLVDEARDVAIKEQMTVVLRYVNKKGSIVECFIGIIHVSDTTAQSLKHAIDGLFSKLGLSLSKCRGQGYDGASNMRGEFKGLKSLILADNKSAFYIHCFAHQLQLALVKVAKHYKKIQEFFDMLQKMATVVGGSCKRKEILLMNQYEQIVERIARGEILTGKGLNQETTLKRPGDTRWGSHFGTVTSVISLFSPIISLMKIIEDEPKNDAARTDAGCILYAMEDFEFAFLLHLMKLILGISYELSQALQRKDQDLLNAIGLVKVVKSRLQEVRDNGFDELLQETNIFAKKYDIDIPNMEDVYCPKGRSRRRLESFTFLHYFKVELFNRVIDTQVQELDDRFDNVNTKLLECLSCLDPRDSFATFNKEKLIEFARFYPLEFDELADIPFLSSSLSNFIVDVRADSDFVNLKRISELALKMVEKGKDIVYPLVYLLIKLALLLPVATASVERVFSAMTFVKDKLRNRISDDWFNGCMLTYVERDIFDKIDDEDIMQYFQAMKNRRMLL 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2819g00027 945 Pfam hAT family C-terminal dimerisation region 866 921 IPR008906 GO:0046983
Gabi2819g00027 945 MobiDBLite consensus disorder prediction 160 181 - -
Gabi2819g00027 945 SMART 2118neu4 240 335 IPR006580 -
Gabi2819g00027 945 PANTHER GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN 319 911 - -
Gabi2819g00027 945 CDD KOW_RPS4 1 43 IPR041982 -
Gabi2819g00027 945 Pfam Domain of unknown function (DUF4371) 286 520 IPR025398 -
Gabi2819g00027 945 Gene3D - 1 45 IPR014722 -
Gabi2819g00027 945 SUPERFAMILY Ribonuclease H-like 429 915 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2819g00027 Gabi-Chr2819 361427 369134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2819g00027 1 43 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 83.721 4.95e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2819g00027 - - dct:110093508 796.964