Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2819g00019 ATGCCTGAGTCTCTGAAACAACCAGCGAATAGACTAAAGCAAAGGTCTCACCCCTTGCAAGAGTCCCAGATGCCAAGAAAATTACGCATCATGTATGACGATCCTGATGCTACTGATTCATCATCTGAAGATGAGGCAGAGTTGATTGTGAAGCCCAAAAAAACAAAACGAACCATTCTTGAGATGTCACTTCCCCCTGTTCCTGCCATCCCTATCTCCTCCGGAACTAGCTCGTGTGAGGAGAATAACAACAGCAATGCATTTAAGACTGGCATTGAGGGTCAGCCTCAAAACAGGAAGAGGGTTTCAACCCAAACCCCACCAAGGAGGAGGCGATCACCTGCGAAATACAGAGGTGTTCGGCAGAGGAAATGGGGAAAGTGGGCTGCTGAGATTCGTGATCCGTTTAAGAGGGCCCGTATCTGGTTAGGCACTTACGACACTGCAGAAGAGGCTTCCCAAGCTTACGAGGCAAAAAGGCTTGATTTTGAAGCTATGGCAAAGGCTCAAGCCCACAATAATGGCTCTTCTGCAGCACCCTTGGCTACAACTTCTGATAAGCATAACTACTGTAAATCTTCTGCTGCTGCAGCATCTGTAACAGAAAAGTTTTCTACTACTTTCGAGGACTTAGAGAGCATGTTCTCACGCACATCACCATCCTCTGTGCTTGGGTCAGATACCTTGGCTTTCAATTCAATTGAGAAGGGTAATATTTCCAGCAATGAAGCTGTTGAGGCCAGTGATTTGGTGGCTGAACTGGCGGGGTTGGAAATACCAGATTTGAATCTGTTGAAGAAGCCTCCACCATCTGCTGCTGCTGCTCCATCTGGGTCTGAGCCCATCCTTGGGCTTGATTTTGATTGGTTACCGTTTGATGATAATGGGGAAAGTTTTGATGATCTTGGTGGCCTGGAGGATATTCAAATTTGTGGGTTTGATGACAATGAGACTAGTAAGCTTCCTGATTTCGATTTTGGTGATTTTGGTCCTGATGAGTTTGCTGATTGGACTGAGGAACCCCGCAATAAACCTTGA 1038 0.4634 MPESLKQPANRLKQRSHPLQESQMPRKLRIMYDDPDATDSSSEDEAELIVKPKKTKRTILEMSLPPVPAIPISSGTSSCEENNNSNAFKTGIEGQPQNRKRVSTQTPPRRRRSPAKYRGVRQRKWGKWAAEIRDPFKRARIWLGTYDTAEEASQAYEAKRLDFEAMAKAQAHNNGSSAAPLATTSDKHNYCKSSAAAASVTEKFSTTFEDLESMFSRTSPSSVLGSDTLAFNSIEKGNISSNEAVEASDLVAELAGLEIPDLNLLKKPPPSAAAAPSGSEPILGLDFDWLPFDDNGESFDDLGGLEDIQICGFDDNETSKLPDFDFGDFGPDEFADWTEEPRNKP 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2819g00019 345 SMART rav1_2 116 170 IPR001471 GO:0003700|GO:0006355
Gabi2819g00019 345 MobiDBLite consensus disorder prediction 66 120 - -
Gabi2819g00019 345 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 240 - -
Gabi2819g00019 345 MobiDBLite consensus disorder prediction 322 345 - -
Gabi2819g00019 345 Gene3D AP2/ERF domain 115 174 IPR036955 GO:0003700|GO:0006355
Gabi2819g00019 345 SUPERFAMILY DNA-binding domain 116 163 IPR016177 GO:0003677
Gabi2819g00019 345 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Gabi2819g00019 345 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Gabi2819g00019 345 MobiDBLite consensus disorder prediction 70 103 - -
Gabi2819g00019 345 MobiDBLite consensus disorder prediction 1 48 - -
Gabi2819g00019 345 MobiDBLite consensus disorder prediction 104 120 - -
Gabi2819g00019 345 ProSiteProfiles AP2/ERF domain profile. 116 176 IPR001471 GO:0003700|GO:0006355
Gabi2819g00019 345 CDD AP2 115 158 IPR001471 GO:0003700|GO:0006355
Gabi2819g00019 345 Pfam AP2 domain 116 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2819g00019 Gabi-Chr2819 227616 228653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2819g00019 5 336 AP2-EREBP Transcription Factor Family AT1G68550 35.736 3.04e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2819g00019 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2819g00019 - - gmx:102660769 400.593