Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2819g00006 ATGGAAATTGGAACCCTTTTGATAACTGTGTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAATGTGTTAGACGCAGAGGGAAAGACCCTTTTGGTCATCTTAGTGGGAGCACCGGGGAGCGGGAAGTCCACCTTCTGTGAAGAGGTTATGCGTTCCTCTACACGCTCTTGGGTTCGCGTTTGCCAGGACACCATTGGAAATGGTAAAGCAGGAAATAAAGCTCAGTGCCTAAGCAGTGCAGCTACAGCATTGAAGGATGGGAAGAGTGTATTTATTGACAGGTGCAATCTTGACAGAGAACAGCGCACAGAATTTGTAAAGCTTGGTGTTGGACCCCATATAGATGTCCATGCTGTTGTACTTGATCTTCCGGCTAAGCTTTGTATTTCTCGATCTGTCAAACGGACTGGGCATGAAGGAAATTTGCAGGGCGGAAAAGCTGCTGCGGTTGTGAATAGAATGCTTCAAAAGAAAGAGCTTCCCAAATTAAGTGAAGGGTTTAACCGGATAACTTTTTGTCAGAGTGAGAGTGATGTCAAAGATGCTATTAATACATACAGCACACTTGGGCCACAAGATAACCTTCCATATGGCTGCTTTGGCCAAAAGAATCCAGATTCCAAAATTCAAGTTGGTATAATGAAGTTTCTAAAAAAGGCAGACGTCCCCGCTGATGCTGCATCTAGGAAGAATGGCATTGGAAACTCCACTTCCCAGACACCTGGGAAAAATGATTCCTGCTGCAAAGATATGGAAAAAATTCCCTCGATTCCAGATAATGCCAACTTAGAGTCAACGGAAGTGGAAGGCCAGGCAGTTGACTCTACTGGTTCCCATGCCAATCGAGTTTCTCTGGGTGATACTCCCACTCTGGCATTTCCATCTATTTCAACATCTGATTTTCAATTCAACCATGAGAAGGCAGCTGATATTATTGTTGAGAAAGTTGCAGAGTTCTCGAGTAAGACTTGGAATGCCAGACTTGTCCTAGTTGACTTGACTCATAAGTCAAAAATTCTCTCCTTAGTTAAAGCCAAAGCGGCAGAAAAAAATATTGACGCCCAAAAGTTCTTTACCCATGTTGGAGACATTACTCACCTTTATTCCGTGGGAGGTTTGCGCTGTAATGTCATAGCTAATGCTGCCAACTGGCGGTTGAAACCTGGAGGTGGAGGTGTTAATGCAGCAATTTTTGATGCTGCAGGTCCTGAACTGGATTCTGCAACCAAAGAAAAAGCAAAATCTCTTTCGCCTGGGAATGCTGTTGTTGTCCCTCTACCTTCATCTTCTCCGTTGTTTACTAGAGAGGGTGTAACCCATGTAATACATGTTCTTGGACCTAATATGAACCCACAAAGACCAAATTGTCTAAAAAATGATTATAGTAAAGGCTGCAAAATTCTCCAAGATGCATATGCTTCACTATTTGAAGGTTTTGCATCAATTGTGAGGAACCAGGCAGACCAACCTGGGGGAAGAAATGAAAACCTTAGAAAAAAGTCTTTGGAGTCACAGGATCAGTCTGAATGTTATTCGAGAAATCATTTTACAAATTCTGATCAAAAGAGTAAGAGAGATGCTGATCATGGATCAGAAAAGAGCAAGAAATACAAGGGAAATCAGGATGATTTTGGATCTACCTTTACTGATTCAAGGGATGAAAAGGTAGATTTAGGGCCTGGAAGAACTGATGGTAGCATGATTAAGGCATGGGGATCATGGGCTCAAGCTCTTCACCGTATAGCAATGCATCCTGAAAACCACAAGGATGACTTGCTTGAAATTTCAGAAGATGTTGTTGTATTGAATGATCTTTATCCTAAGGCACAGAAGCATATTCTGGTTTTGACACGAACTGGAGGTCTTGATTGTCTGGCAGATGTCCAAAACGAGCACCTTCAGTTATTGAAGAAGATACATGCTGTGGGTTTGAAATGGGCTGAGAAGTTCTTGCATGAGAATGCTTCTCTGGTATTTCGTCTTGGATATCACTCGGCTCCATCAATGCGACAACTACATTTACATGTCATTAGCCAGGACTTTGAATCAAAACATTTGAAGAATAAGAAGCACTGGAACTCATTTAACACTGCTTTCTTTCGTGACTCGGTAGATGTAATGGATGAGATCTCTAAACATGGGAAAGCAATATTGAAAAATGATGACAAGCTGTTGACTATGGAGTTGAGGTGCCACAGATGTAGAAGTGCGCATCCAAACATACCACGGTTAAAATCACATATTAGCAGCTGCCATGCTCCTTTTCCAGCTTACCTACTTCAAAACGGACGTTTGGTGCATGCACCAGGTCAACCGCACAACAATTTATAG 2343 0.4247 MEIGTLLITVSLCVCVCVCVCVCVNVLDAEGKTLLVILVGAPGSGKSTFCEEVMRSSTRSWVRVCQDTIGNGKAGNKAQCLSSAATALKDGKSVFIDRCNLDREQRTEFVKLGVGPHIDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFNRITFCQSESDVKDAINTYSTLGPQDNLPYGCFGQKNPDSKIQVGIMKFLKKADVPADAASRKNGIGNSTSQTPGKNDSCCKDMEKIPSIPDNANLESTEVEGQAVDSTGSHANRVSLGDTPTLAFPSISTSDFQFNHEKAADIIVEKVAEFSSKTWNARLVLVDLTHKSKILSLVKAKAAEKNIDAQKFFTHVGDITHLYSVGGLRCNVIANAANWRLKPGGGGVNAAIFDAAGPELDSATKEKAKSLSPGNAVVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNCLKNDYSKGCKILQDAYASLFEGFASIVRNQADQPGGRNENLRKKSLESQDQSECYSRNHFTNSDQKSKRDADHGSEKSKKYKGNQDDFGSTFTDSRDEKVDLGPGRTDGSMIKAWGSWAQALHRIAMHPENHKDDLLEISEDVVVLNDLYPKAQKHILVLTRTGGLDCLADVQNEHLQLLKKIHAVGLKWAEKFLHENASLVFRLGYHSAPSMRQLHLHVISQDFESKHLKNKKHWNSFNTAFFRDSVDVMDEISKHGKAILKNDDKLLTMELRCHRCRSAHPNIPRLKSHISSCHAPFPAYLLQNGRLVHAPGQPHNNL 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2819g00006 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 177 IPR027417 -
Gabi2819g00006 780 Pfam AAA domain 35 161 - -
Gabi2819g00006 780 ProSitePatterns HIT domain signature. 664 682 IPR019808 -
Gabi2819g00006 780 Gene3D - 577 758 IPR036265 -
Gabi2819g00006 780 Gene3D Leucine Aminopeptidase, subunit E, domain 1 275 351 IPR043472 -
Gabi2819g00006 780 FunFam Transcription factor bHLH140 341 488 - -
Gabi2819g00006 780 SUPERFAMILY HIT-like 571 739 IPR036265 -
Gabi2819g00006 780 Pfam Macro domain 383 462 IPR002589 -
Gabi2819g00006 780 SUPERFAMILY Macro domain-like 294 332 IPR043472 -
Gabi2819g00006 780 SMART YBR022w_8 360 578 IPR002589 -
Gabi2819g00006 780 Pfam C2HE / C2H2 / C2HC zinc-binding finger 700 753 IPR032566 -
Gabi2819g00006 780 FunFam aprataxin isoform X2 576 756 - -
Gabi2819g00006 780 FunFam Transcription factor bHLH140 25 192 - -
Gabi2819g00006 780 MobiDBLite consensus disorder prediction 522 544 - -
Gabi2819g00006 780 Pfam Scavenger mRNA decapping enzyme C-term binding 583 695 - -
Gabi2819g00006 780 MobiDBLite consensus disorder prediction 490 566 - -
Gabi2819g00006 780 ProSiteProfiles Macro domain profile. 348 523 IPR002589 -
Gabi2819g00006 780 Gene3D - 27 192 IPR027417 -
Gabi2819g00006 780 Gene3D Leucine Aminopeptidase, subunit E, domain 1 352 491 IPR043472 -
Gabi2819g00006 780 PANTHER APRATAXIN-RELATED 295 755 - -
Gabi2819g00006 780 SUPERFAMILY Macro domain-like 342 480 IPR043472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2819g00006 Gabi-Chr2819 31067 35751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2819g00006 30 770 C2H2 Transcription Factor Family AT5G01310 59.379 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2819g00006 K10863 - gmx:100786762 1264.21