Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2819g00005 ATGGAAATTGGAACCCTTTTGATAACTGTGTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAATGTGTTAGACGCAGAGGGAAAGACCCTTTTGGTCATCTTAGTGGGAGCACCGGGGAGCGGGAAGTCCACCTTCTGTGAAGAGGTTATGCGTTCCTCTACACGCTCTTGGGTTCGCGTTTGCCAGGACACCATTGGAAATGGTAAAGCAGGAAATAAAGCTCAGTGCCTAAGCAGTGCAGCTACAGCATTGAAGGATGGGAAGAGTGTATTTATTGACAGGTGCAATCTTGACAGAGAACAGCGCACAGAATTTGTAAAGCTTGGTGTTGGACCCCATATAGATGTCCATGCTGTTGTACTTGATCTTCCGGCTAAGCTTTGTATTTCTCGATCTGTCAAACGGACTGGGCATGAAGGAAATTTGCAGGGCGGAAAAGCTGCTGCGGTTGTGAATAGAATGCTTCAAAAGAAAGAGCTTCCCAAATTAAGTGAAGGGTTTAACCGGATAACTTTTTGTCAGAGTGAGAGTGATGTCAAAGATGCTATTAATACATACAGCACACTTGGGCCACAAGATAACCTTCCATATGGCTGCTTTGGCCAAAAGAATCCAGATTCCAAAATTCAAGTTGGTATAATGAAGTTTCTAAAAAAGGCAGACGTCCCCGCTGATGCTGCATCTAGGAAGAATGAGTCAACGGAAGTGGAAGGCCAGGCAGTTGACTCTACTGGTTCCCATGCCAATCGAGTTTCTCTGGGTGATACTCCCACTCTGGCATTTCCATCTATTTCAACATCTGATTTTCAATTCAACCATGAGAAGGCAGCTGATATTATTGTTGAGAAAGTTGCAGAGTTCTCGAGTAAGACTTGGAATGCCAGACTTGTCCTAGTTGACTTGACTCATAAGTCAAAAATTCTCTCCTTAGTTAAAGCCAAAGCGGCAGAAAAAAATATTGACGCCCAAAAGTTCTTTACCCATGTTGGAGACATTACTCACCTTTATTCCGTGGGAGGTTTGCGCTGTAATGTCATAGCTAATGCTGCCAACTGGCGGTTGAAACCTGGAGGTGGAGGTGTTAATGCAGCAATTTTTGATGCTGCAGGTCCTGAACTGGATTCTGCAACCAAAGAAAAAGCAAAATCTCTTTCGCCTGGGAATGCTGTTGTTGTCCCTCTACCTTCATCTTCTCCGTTGTTTACTAGAGAGGGTGTAACCCATGTAATACATGTTCTTGGACCTAATATGAACCCACAAAGACCAAATTGTCTAAAAAATGATTATAGTAAAGGCTGCAAAATTCTCCAAGATGCATATGCTTCACTATTTGAAGGTTTTGCATCAATTGTGAGGAACCAGGCAGACCAACCTGGGGGAAGAAATGAAAACCTTAGAAAAAAGTCTTTGGAAGATGCTGATCATGGATCAGAAAAGAGCAAGAAATACAAGGGAAATCAGGATGATTTTGGATCTACCTTTACTGATTCAAGGGATGAAAAGGTAGATTTAGGGCCTGGAAGAACTGATGGTAGCATGATTAAGGCATGGGGATCATGGGCTCAAGCTCTTCACCGTATAGCAATGCATCCTGAAAACCACAAGGATGACTTGCTTGAAATTTCAGAAGATGTTGTTGTATTGAATGATCTTTATCCTAAGGCACAGAAGCATATTCTGGTTTTGACACGAACTGGAGGTCTTGATTGTCTGGCAGATGTCCAAAACGAGCACCTTCAGTTATTGAAGAAGATACATGCTGTGGGTTTGAAATGGGCTGAGAAGTTCTTGCATGAGAATGCTTCTCTGGTATTTCGTCTTGGATATCACTCGGCTCCATCAATGCGACAACTACATTTACATGTCATTAGCCAGGACTTTGAATCAAAACATTTGAAGAATAAGAAGCACTGGAACTCATTTAACACTGCTTTCTTTCGTGACTCGGTAGATGTAATGGATGAGATCTCTAAACATGGGAAAGCAATATTGAAAAATGATGACAAGCTGTTGACTATGGAGTTGAGGTGCCACAGATGTAGAAGTGCGCATCCAAACATACCACGGTTAAAATCACATATTAGCAGCTGCCATGCTCCTTTTCCAGCTTACCTACTTCAAAACGGACGTTTGGTGCATGCACCAGGTCAACCGCACAACAATTTATAG 2181 0.4273 MEIGTLLITVSLCVCVCVCVCVCVNVLDAEGKTLLVILVGAPGSGKSTFCEEVMRSSTRSWVRVCQDTIGNGKAGNKAQCLSSAATALKDGKSVFIDRCNLDREQRTEFVKLGVGPHIDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFNRITFCQSESDVKDAINTYSTLGPQDNLPYGCFGQKNPDSKIQVGIMKFLKKADVPADAASRKNESTEVEGQAVDSTGSHANRVSLGDTPTLAFPSISTSDFQFNHEKAADIIVEKVAEFSSKTWNARLVLVDLTHKSKILSLVKAKAAEKNIDAQKFFTHVGDITHLYSVGGLRCNVIANAANWRLKPGGGGVNAAIFDAAGPELDSATKEKAKSLSPGNAVVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNCLKNDYSKGCKILQDAYASLFEGFASIVRNQADQPGGRNENLRKKSLEDADHGSEKSKKYKGNQDDFGSTFTDSRDEKVDLGPGRTDGSMIKAWGSWAQALHRIAMHPENHKDDLLEISEDVVVLNDLYPKAQKHILVLTRTGGLDCLADVQNEHLQLLKKIHAVGLKWAEKFLHENASLVFRLGYHSAPSMRQLHLHVISQDFESKHLKNKKHWNSFNTAFFRDSVDVMDEISKHGKAILKNDDKLLTMELRCHRCRSAHPNIPRLKSHISSCHAPFPAYLLQNGRLVHAPGQPHNNL 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2819g00005 726 FunFam Transcription factor bHLH140 25 192 - -
Gabi2819g00005 726 MobiDBLite consensus disorder prediction 465 490 - -
Gabi2819g00005 726 PANTHER APRATAXIN-RELATED 263 701 - -
Gabi2819g00005 726 SMART YBR022w_8 328 498 IPR002589 -
Gabi2819g00005 726 Pfam Scavenger mRNA decapping enzyme C-term binding 529 641 - -
Gabi2819g00005 726 Gene3D Leucine Aminopeptidase, subunit E, domain 1 228 319 IPR043472 -
Gabi2819g00005 726 MobiDBLite consensus disorder prediction 458 510 - -
Gabi2819g00005 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 177 IPR027417 -
Gabi2819g00005 726 SUPERFAMILY Macro domain-like 262 300 IPR043472 -
Gabi2819g00005 726 Gene3D - 523 704 IPR036265 -
Gabi2819g00005 726 Pfam AAA domain 35 161 - -
Gabi2819g00005 726 Pfam C2HE / C2H2 / C2HC zinc-binding finger 646 699 IPR032566 -
Gabi2819g00005 726 SUPERFAMILY HIT-like 517 685 IPR036265 -
Gabi2819g00005 726 FunFam aprataxin isoform X2 522 702 - -
Gabi2819g00005 726 FunFam Transcription factor bHLH140 309 456 - -
Gabi2819g00005 726 Gene3D - 27 192 IPR027417 -
Gabi2819g00005 726 Gene3D Leucine Aminopeptidase, subunit E, domain 1 320 459 IPR043472 -
Gabi2819g00005 726 ProSitePatterns HIT domain signature. 610 628 IPR019808 -
Gabi2819g00005 726 Pfam Macro domain 351 430 IPR002589 -
Gabi2819g00005 726 MobiDBLite consensus disorder prediction 231 252 - -
Gabi2819g00005 726 ProSiteProfiles Macro domain profile. 316 495 IPR002589 -
Gabi2819g00005 726 SUPERFAMILY Macro domain-like 309 448 IPR043472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2819g00005 Gabi-Chr2819 31067 35751 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2819g00005 30 716 C2H2 Transcription Factor Family AT5G01310 63.242 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2819g00005 K10863 - gmx:100786762 1165.98