Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2819g00004 ATGAAAAGCTCGAATCCGAAGATGGACATCGACGTGGACGAAGCTTCTGGACCCAAAGACGCAGAGGGAAAGACCCTTTTGGTCATCTTAGTGGGAGCACCGGGGAGCGGGAAGTCCACCTTCTGTGAAGAGGTTATGCGTTCCTCTACACGCTCTTGGGTTCGCGTTTGCCAGGACACCATTGGAAATGGTAAAGCAGGAAATAAAGCTCAGTGCCTAAGCAGTGCAGCTACAGCATTGAAGGATGGGAAGAGTGTATTTATTGACAGGTGCAATCTTGACAGAGAACAGCGCACAGAATTTGTAAAGCTTGGTGTTGGACCCCATATAGATGTCCATGCTGTTGTACTTGATCTTCCGGCTAAGCTTTGTATTTCTCGATCTGTCAAACGGACTGGGCATGAAGGAAATTTGCAGGGCGGAAAAGCTGCTGCGGTTGTGAATAGAATGCTTCAAAAGAAAGAGCTTCCCAAATTAAGTGAAGGGTTTAACCGGATAACTTTTTGTCAGAGTGAGAGTGATGTCAAAGATGCTATTAATACATACAGCACACTTGGGCCACAAGATAACCTTCCATATGGCTGCTTTGGCCAAAAGAATCCAGATTCCAAAATTCAAGTTGGTATAATGAAGTTTCTAAAAAAGGCAGACGTCCCCGCTGATGCTGCATCTAGGAAGAATGGCATTGGAAACTCCACTTCCCAGACACCTGGGAAAAATGATTCCTGCTGCAAAGATATGGAAAAAATTCCCTCGATTCCAGATAATGCCAACTTAGAGTCAACGGAAGTGGAAGGCCAGGCAGTTGACTCTACTGGTTCCCATGCCAATCGAGTTTCTCTGGGTGATACTCCCACTCTGGCATTTCCATCTATTTCAACATCTGATTTTCAATTCAACCATGAGAAGGCAGCTGATATTATTGTTGAGAAAGTTGCAGAGTTCTCGAGTAAGACTTGGAATGCCAGACTTGTCCTAGTTGACTTGACTCATAAGTCAAAAATTCTCTCCTTAGTTAAAGCCAAAGCGGCAGAAAAAAATATTGACGCCCAAAAGTTCTTTACCCATGTTGGAGACATTACTCACCTTTATTCCGTGGGAGGTTTGCGCTGTAATGTCATAGCTAATGCTGCCAACTGGCGGTTGAAACCTGGAGGTGGAGGTGTTAATGCAGCAATTTTTGATGCTGCAGGTCCTGAACTGGATTCTGCAACCAAAGAAAAAGCAAAATCTCTTTCGCCTGGGAATGCTGTTGTTGTCCCTCTACCTTCATCTTCTCCGTTGTTTACTAGAGAGGGTGTAACCCATGTAATACATGTTCTTGGACCTAATATGAACCCACAAAGACCAAATTGTCTAAAAAATGATTATAGTAAAGGCTGCAAAATTCTCCAAGATGCATATGCTTCACTATTTGAAGGTTTTGCATCAATTGTGAGGAACCAGGCAGACCAACCTGGGGGAAGAAATGAAAACCTTAGAAAAAAGTCTTTGGAGTCACAGGATCAGTCTGAATGTTATTCGAGAAATCATTTTACAAATTCTGATCAAAAGAGTAAGAGAGATGCTGATCATGGATCAGAAAAGAGCAAGAAATACAAGGGAAATCAGGATGATTTTGGATCTACCTTTACTGATTCAAGGGATGAAAAGGTAGATTTAGGGCCTGGAAGAACTGATGGTAGCATGATTAAGGCATGGGGATCATGGGCTCAAGCTCTTCACCGTATAGCAATGCATCCTGAAAACCACAAGGATGACTTGCTTGAAATTTCAGAAGATGTTGTTGTATTGAATGATCTTTATCCTAAGGCACAGAAGCATATTCTGGTTTTGACACGAACTGGAGGTCTTGATTGTCTGGCAGATGTCCAAAACGAGCACCTTCAGTTATTGAAGAAGATACATGCTGTGGGTTTGAAATGGGCTGAGAAGTTCTTGCATGAGAATGCTTCTCTGGTATTTCGTCTTGGATATCACTCGGCTCCATCAATGCGACAACTACATTTACATGTCATTAGCCAGGACTTTGAATCAAAACATTTGAAGAATAAGAAGCACTGGAACTCATTTAACACTGCTTTCTTTCGTGACTCGGTAGATGTAATGGATGAGATCTCTAAACATGGGAAAGCAATATTGAAAAATGATGACAAGCTGTTGACTATGGAGTTGAGGTGCCACAGATGTAGAAGTGCGCATCCAAACATACCACGGTTAAAATCACATATTAGCAGCTGCCATGCTCCTTTTCCAGCTTACCTACTTCAAAACGGACGTTTGGTGCATGCACCAGGTCAACCGCACAACAATTTATAG 2319 0.4265 MKSSNPKMDIDVDEASGPKDAEGKTLLVILVGAPGSGKSTFCEEVMRSSTRSWVRVCQDTIGNGKAGNKAQCLSSAATALKDGKSVFIDRCNLDREQRTEFVKLGVGPHIDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFNRITFCQSESDVKDAINTYSTLGPQDNLPYGCFGQKNPDSKIQVGIMKFLKKADVPADAASRKNGIGNSTSQTPGKNDSCCKDMEKIPSIPDNANLESTEVEGQAVDSTGSHANRVSLGDTPTLAFPSISTSDFQFNHEKAADIIVEKVAEFSSKTWNARLVLVDLTHKSKILSLVKAKAAEKNIDAQKFFTHVGDITHLYSVGGLRCNVIANAANWRLKPGGGGVNAAIFDAAGPELDSATKEKAKSLSPGNAVVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNCLKNDYSKGCKILQDAYASLFEGFASIVRNQADQPGGRNENLRKKSLESQDQSECYSRNHFTNSDQKSKRDADHGSEKSKKYKGNQDDFGSTFTDSRDEKVDLGPGRTDGSMIKAWGSWAQALHRIAMHPENHKDDLLEISEDVVVLNDLYPKAQKHILVLTRTGGLDCLADVQNEHLQLLKKIHAVGLKWAEKFLHENASLVFRLGYHSAPSMRQLHLHVISQDFESKHLKNKKHWNSFNTAFFRDSVDVMDEISKHGKAILKNDDKLLTMELRCHRCRSAHPNIPRLKSHISSCHAPFPAYLLQNGRLVHAPGQPHNNL 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2819g00004 772 Pfam Macro domain 375 454 IPR002589 -
Gabi2819g00004 772 Gene3D - 569 750 IPR036265 -
Gabi2819g00004 772 PANTHER APRATAXIN-RELATED 287 747 - -
Gabi2819g00004 772 SUPERFAMILY HIT-like 563 731 IPR036265 -
Gabi2819g00004 772 Pfam AAA domain 27 153 - -
Gabi2819g00004 772 FunFam Transcription factor bHLH140 14 184 - -
Gabi2819g00004 772 SMART YBR022w_8 352 570 IPR002589 -
Gabi2819g00004 772 Gene3D Leucine Aminopeptidase, subunit E, domain 1 344 483 IPR043472 -
Gabi2819g00004 772 Pfam Scavenger mRNA decapping enzyme C-term binding 575 687 - -
Gabi2819g00004 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 169 IPR027417 -
Gabi2819g00004 772 ProSiteProfiles Macro domain profile. 340 515 IPR002589 -
Gabi2819g00004 772 Pfam C2HE / C2H2 / C2HC zinc-binding finger 692 745 IPR032566 -
Gabi2819g00004 772 SUPERFAMILY Macro domain-like 333 472 IPR043472 -
Gabi2819g00004 772 FunFam aprataxin isoform X2 568 748 - -
Gabi2819g00004 772 SUPERFAMILY Macro domain-like 286 324 IPR043472 -
Gabi2819g00004 772 MobiDBLite consensus disorder prediction 514 536 - -
Gabi2819g00004 772 Gene3D Leucine Aminopeptidase, subunit E, domain 1 267 343 IPR043472 -
Gabi2819g00004 772 Gene3D - 7 184 IPR027417 -
Gabi2819g00004 772 MobiDBLite consensus disorder prediction 482 558 - -
Gabi2819g00004 772 ProSitePatterns HIT domain signature. 656 674 IPR019808 -
Gabi2819g00004 772 FunFam Transcription factor bHLH140 333 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2819g00004 Gabi-Chr2819 31067 35751 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2819g00004 8 762 C2H2 Transcription Factor Family AT5G01310 58.136 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2819g00004 K10863 - gmx:100786762 1278.08