Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2817g00002 ATGCAGGACCCACCCAAGCAGCCTTTACATCAAGGCAATGAGAGAAAAAGACACTATAGAGGTGTTAGGCAGAGACCATGGGGCAAATGGGCAGCCGAAATCCGTGACCCTAAAAAAGCAGCTAGAGTGTGGCTTGGCACGTTTGACACGGCAGAAGCTGCAGCATTTGCATATGATGATGCTGCTTTGAAATTCAAAGGAACCAAAGCCAAGCTCAATTTTCCTGAACGTGTTGTTGCTTCATCAGCCTACTCTACTACTTCAGCTTCGGCTCTTGTTTCGACCTCTGCTTTTACTTCTACTTCGGCATTGCCTGTTTATGATCAACCTCTTGCACCTACCTTATTATCTAATGAAGAAGGTTTTCCAAACCTAATGCAGTACGCGCAGCTGCTTTGGAGTAGGGATGATGATGATGTTCAACGTGCTACTTCGGGTCTTCATTATCATTCCAATGAGGATTCGAGTTCAACATTGTTCTCATCAATATATACTTCTGTGTCTGATCAACAGCAGATATATAATTGGAGATAA 534 0.4363 MQDPPKQPLHQGNERKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAFAYDDAALKFKGTKAKLNFPERVVASSAYSTTSASALVSTSAFTSTSALPVYDQPLAPTLLSNEEGFPNLMQYAQLLWSRDDDDVQRATSGLHYHSNEDSSSTLFSSIYTSVSDQQQIYNWR 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2817g00002 177 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Gabi2817g00002 177 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Gabi2817g00002 177 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Gabi2817g00002 177 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Gabi2817g00002 177 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Gabi2817g00002 177 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Gabi2817g00002 177 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Gabi2817g00002 177 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Gabi2817g00002 177 Gene3D AP2/ERF domain 17 78 IPR036955 GO:0003700|GO:0006355
Gabi2817g00002 177 PANTHER DNA-BINDING DOMAIN 12 136 IPR044808 GO:0003700|GO:0009873
Gabi2817g00002 177 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2817g00002 Gabi-Chr2817 29164 30220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2817g00002 2 105 AP2-EREBP Transcription Factor Family AT5G61890 65.741 1.03e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2817g00002 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2817g00002 - - gsj:114398791 197.593