Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi280g00007 ATGACGGTGTTTTCCGCCGCAAAGCAGGTGTTTCCGGTGGACTACGAGACCGAAGTGTCGCAGCGTCTTTTGGAAGCTTCTCACTCTGGCGATCTGAGCTCCGTCGTAGACTGCATTTCCGATCCCTTGGTCGACGTCAACTTCGTCGGCGCCGTCACCTTGAGGATCCGAAGGACCGAGTTGGTTCTGCACGATGAATCGCCGAGTCAGGTACGCGTCGAGTTCGACGAGTTCAAAACCGACGTCACGCCTTTGTTTCTCGCCGTTCATGCTGGAAATGCAGATATCGTGAGGAAATTACTGAGTAATGGAGCTGAAGTAAACCAAAAGCTGTTCAGAGGCTTTGCAACGACTGCAGCAGTGAGGGAGGGCCACCTTAATATTCTTGAGATGTTAATTAAAGCTGGGGCATCACAGCCAGCATGTGAAGAAGCTCTTTTGGAAGCAAGCTGCCATGGGCAAGCCGAACCTGCAGAATTGCTTATGAACTCTGATTTGATCCGACCCCATGTATCTGTACATGCTTTTGGGATTGCGTGTTGCAGGGGATTCTTGGATGTCATTGAAACACTCATAAAGTGCAGCGTGGATACGAGTGCTGCAGATCGGTTGCTTTTACAGTCACTTAAGCCTTCTCTCTACACAAATGTGGATTGTACTGCACTTTTTGCCGCTGTAATTCATAGACAGGTCCCTGTCGTGGGTTTACTACTGAAGGATTGTGCTAGGATACACTATGAAACAAGGCTTGGAGCATGGTCATGGGACATTTCCACAGGCGAAGAGTTTCGTGTGGGAGCTGGGATGGGAGAACCTTATCCTATCACCTGGTGTGCAGTTGAATATTTTGAAAAGAGCGGTGCTATACTGCGCATGCTCTTGCATCATGTTTCCCCCAATACTCCTCACCATGGAAGAACCCTTCTACACCATGCCGTCCTATGTGGCAACGTTGAGGCTGTCAGGATACTCTTGGAATGTGGTGCTGATGTGGAATCGCCAGTCAAAACAACCTGCCAGACCAAGTTTCATCCAATACACATGGCTTCTCGTCTTGGCTTATCAACAATTATTCAGTGCCTTATTGATTTTGGCTGTGATTTGAACTCTACAACAGACTCTGGTGATACAGCTTTGATGATCTGTGCAAAATATAATCAAGCAAATTGTCTCGAAGTACTGACAAGTGCTGGTGCTGATTTTGGCTTGGTGAATACTGCTGGACAATCTGCAAGTTCAATTGCTGAGTCAAAGCAATGGTGGCTAGTTTTTCAGCAAGCAGTGTTTGATACAATTAGAAAAGGAAAGATACCTAAATCCAGCAATACTTCTGCTTTTTCCCCTCTATTGTTTGTAACTCGATCTGGGGACACCGAATCTTTGAAAACTCTCATCGGTTCTGGAGAATTCAATCTTGACTATCAAGATGATGATGGTTTCTCTGCAGCTATGGTTGCTGCTTTGAAGGGTTACGTTGAATCATTTCGATTGCTTGTATACGCGGGAGCTAATGTAAAGCTATGCAATAAATCAGGAGAAACAGCAATTTCCTTGTCTAAATTAAACCAGAGTCATGATTTATTTGAAAAGGTCATGCTTGAATTTGCGCTTCAAAGGGGCAACTACAATGCTGGTGGCTTTTATGCTTTACATTGTGCAGCTCGACATGGTGACTTGGATGCTGTTAAATTGCTCACTAGTAAAGGTTATGATGTGAATGCCCCTGATGGTGACGGCTACACTCCCCTCATGTTAGCAGCAAGGGAAGGCCACGGCTTCATTTGTGAGGTTCTAATTTCATATGGAGCCCACTGCAATGCTAAGAACGCCAGAGGGGAAACTGCACTTTCACTTGCAAAGAAAGAAGGAAGAAAAAACGATGCAGAGGATGTTATACTAGATGAACTTGCTCGTAGATTGGTACTAGGTGGTGCCTATGTGAAGAAGCACACCAAATGTGGGAAGGGAACTCCACATGTTAAACAAATACGGATGATAGGATCTGCAGGGTTGCTGCATTGGGGGAAGTCAAATCGCAGAAATTTGAAGTGCTGTGAGGCAGAGTTGGGGCCAAGCTTAACATTCCGTAGAAATAGGTACCAGAAAGGTGACGCAGATGAACCTGGAATGTTTAGGGTGCTTACGACCAAGAACAAGGAAGTGCATTTTGTATGTGATGGGGGATTAGAAGTTGCTGAACTTTGGGTCAGGGGTATCAAACTTGTTACCAGAGAGGCTATGTTTGGTAAAATGTGA 2256 0.4552 MTVFSAAKQVFPVDYETEVSQRLLEASHSGDLSSVVDCISDPLVDVNFVGAVTLRIRRTELVLHDESPSQVRVEFDEFKTDVTPLFLAVHAGNADIVRKLLSNGAEVNQKLFRGFATTAAVREGHLNILEMLIKAGASQPACEEALLEASCHGQAEPAELLMNSDLIRPHVSVHAFGIACCRGFLDVIETLIKCSVDTSAADRLLLQSLKPSLYTNVDCTALFAAVIHRQVPVVGLLLKDCARIHYETRLGAWSWDISTGEEFRVGAGMGEPYPITWCAVEYFEKSGAILRMLLHHVSPNTPHHGRTLLHHAVLCGNVEAVRILLECGADVESPVKTTCQTKFHPIHMASRLGLSTIIQCLIDFGCDLNSTTDSGDTALMICAKYNQANCLEVLTSAGADFGLVNTAGQSASSIAESKQWWLVFQQAVFDTIRKGKIPKSSNTSAFSPLLFVTRSGDTESLKTLIGSGEFNLDYQDDDGFSAAMVAALKGYVESFRLLVYAGANVKLCNKSGETAISLSKLNQSHDLFEKVMLEFALQRGNYNAGGFYALHCAARHGDLDAVKLLTSKGYDVNAPDGDGYTPLMLAAREGHGFICEVLISYGAHCNAKNARGETALSLAKKEGRKNDAEDVILDELARRLVLGGAYVKKHTKCGKGTPHVKQIRMIGSAGLLHWGKSNRRNLKCCEAELGPSLTFRRNRYQKGDADEPGMFRVLTTKNKEVHFVCDGGLEVAELWVRGIKLVTREAMFGKM 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi280g00007 751 Gene3D - 5 258 IPR036770 -
Gabi280g00007 751 ProSiteProfiles Ankyrin repeat profile. 374 406 IPR002110 GO:0005515
Gabi280g00007 751 SMART ANK_2a 171 200 IPR002110 GO:0005515
Gabi280g00007 751 SMART ANK_2a 444 474 IPR002110 GO:0005515
Gabi280g00007 751 SMART ANK_2a 341 370 IPR002110 GO:0005515
Gabi280g00007 751 SMART ANK_2a 578 607 IPR002110 GO:0005515
Gabi280g00007 751 SMART ANK_2a 217 246 IPR002110 GO:0005515
Gabi280g00007 751 SMART ANK_2a 111 141 IPR002110 GO:0005515
Gabi280g00007 751 SMART ANK_2a 374 403 IPR002110 GO:0005515
Gabi280g00007 751 SMART ANK_2a 545 574 IPR002110 GO:0005515
Gabi280g00007 751 SMART ANK_2a 80 109 IPR002110 GO:0005515
Gabi280g00007 751 SMART ANK_2a 478 507 IPR002110 GO:0005515
Gabi280g00007 751 SMART ANK_2a 304 333 IPR002110 GO:0005515
Gabi280g00007 751 SUPERFAMILY Ankyrin repeat 78 256 IPR036770 -
Gabi280g00007 751 ProSiteProfiles Ankyrin repeat profile. 304 336 IPR002110 GO:0005515
Gabi280g00007 751 PANTHER ANKYRIN REPEAT-CONTAINING 17 730 - -
Gabi280g00007 751 Gene3D - 270 335 IPR036770 -
Gabi280g00007 751 ProSiteProfiles Ankyrin repeat profile. 80 112 IPR002110 GO:0005515
Gabi280g00007 751 ProSiteProfiles Ankyrin repeat profile. 545 577 IPR002110 GO:0005515
Gabi280g00007 751 Gene3D - 336 428 IPR036770 -
Gabi280g00007 751 Gene3D - 429 532 IPR036770 -
Gabi280g00007 751 ProSiteProfiles Ankyrin repeat region circular profile. 304 332 - -
Gabi280g00007 751 ProSiteProfiles Ankyrin repeat profile. 341 373 IPR002110 GO:0005515
Gabi280g00007 751 SUPERFAMILY Ankyrin repeat 288 626 IPR036770 -
Gabi280g00007 751 ProSiteProfiles Ankyrin repeat profile. 578 610 IPR002110 GO:0005515
Gabi280g00007 751 ProSiteProfiles Ankyrin repeat region circular profile. 578 609 - -
Gabi280g00007 751 ProSiteProfiles Ankyrin repeat region circular profile. 80 108 - -
Gabi280g00007 751 Gene3D - 533 631 IPR036770 -
Gabi280g00007 751 Pfam Ankyrin repeats (3 copies) 536 609 IPR002110 GO:0005515
Gabi280g00007 751 Pfam Ankyrin repeats (3 copies) 282 332 IPR002110 GO:0005515
Gabi280g00007 751 Pfam Ankyrin repeats (3 copies) 85 164 IPR002110 GO:0005515
Gabi280g00007 751 Pfam Ankyrin repeats (3 copies) 344 402 IPR002110 GO:0005515
Gabi280g00007 751 ProSiteProfiles Ankyrin repeat profile. 478 510 IPR002110 GO:0005515
Gabi280g00007 751 ProSiteProfiles Ankyrin repeat region circular profile. 545 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi280g00007 Gabi-Chr280 117998 122362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi280g00007 449 625 Ion Channels AT2G25600 29.282 3.92e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi280g00007 - - gmx:100809132 1160.59