Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2809g00042 ATGAGGGGTTGTGGTGACTATGTATTGGAGCTGAAGTCCATACTTCCGAATGGATGGATTTCTAAGTTGGAAGCCAAAACTTGTGAAATGCTGAAGAATTTTTGCAAAATTAAGCACAAAACTCTTCAGAAAGAAGCAATATTAAACCGCAAATCTATGATAAGAGCTGCTTTTAGAGATGACACGAATGATAATAACATATATTGTCCAGTGTCAAGTGACCTGTCAGAAGAAGGGCTATTTCTCTTCCAACAACGTTGGATTAAAGATGAACCAATCATAGTTCGGGATGTTCTTAAAGTAGAGACATGTCTGAGTTGGGAGCCAAAGGATGTCAGTCCTGCCAAGGAGGACTGGAGGATTAAGGTGAAGGTGGTTCGGGCTTGGAAAGTTCCTAACTTTCAACGTAAAGATTTTGACGACAACGTTGAAATGGTTTTATTGGATGAACATGGTGGTAGGATCCACGCCACTATCGAAGGTTCTTTGTCGGTGTGGAAGAAAATCCATGAAGGAGACTGCTATTTTATAAAAAAAATTGGAGTTGGATTCAATAACGACGTGTTCAGGCCAACTAGGCATCAGTATCGTTTGTCTTTCAATTTGAGGACTGATCTTAGATCAATTGTTGATTCTAATATTTCTGCGAGTGAATTTGATTTTGTTGATTATGACATCGTTGAGAAAGAAACATCTAACTCCCCTTATTTAGTGGACGTCATTGGTTTAGTATCAGGGATTGGTGAAGTTTGTGAACGTGTGGTTTCTGGTAGGAAGACCAAAATGATTATGTTGGAGCTTGACAACCTCAGTCTTTCGGCTGATGGTGTTGAGAGTAGTCTGCGGATGACTCAGTTGTCTACTCAGTCATCCTATTCTTACGAAAATGATTTTTTGAAGGAGACTGAAAAGAAGTCTATAAGTGATGTGAAGCTTTGTGGCGAGGTTACAACTTGTATCATGTATGGGACTATAAAATCTATTGAGAGCAAATACAACCGGTGGTACAAGTCTTGCAAAAAATGTCCATTTTCTGTTTTTGAGGATTTTGAAAAGTGGTACTGTAAGAACTGCCAAAAACATTGGAAAGATTACTATCCGAGATTTAGTGTTCAGGTAAGAGTTGTGGATAACACGGATTCCGTATCATTTCTTCTGTTTGATCGCGACTATGTGTCTTTGCTGGGGATGAGTGCTGCTGAATTGCGCGAGCTGCATTTCAAGAGGGATGAAGCAAATTTCGAGGATGCACGCGAAAATGAAATTGGATCATCAGAACCGGAAAAGGCTGCGATGCACGCTTATGGAAGGTATGTTGATATATTTGATAAACGCTGTGTTTTTGCAAGTGACACCTAA 1359 0.3966 MRGCGDYVLELKSILPNGWISKLEAKTCEMLKNFCKIKHKTLQKEAILNRKSMIRAAFRDDTNDNNIYCPVSSDLSEEGLFLFQQRWIKDEPIIVRDVLKVETCLSWEPKDVSPAKEDWRIKVKVVRAWKVPNFQRKDFDDNVEMVLLDEHGGRIHATIEGSLSVWKKIHEGDCYFIKKIGVGFNNDVFRPTRHQYRLSFNLRTDLRSIVDSNISASEFDFVDYDIVEKETSNSPYLVDVIGLVSGIGEVCERVVSGRKTKMIMLELDNLSLSADGVESSLRMTQLSTQSSYSYENDFLKETEKKSISDVKLCGEVTTCIMYGTIKSIESKYNRWYKSCKKCPFSVFEDFEKWYCKNCQKHWKDYYPRFSVQVRVVDNTDSVSFLLFDRDYVSLLGMSAAELRELHFKRDEANFEDARENEIGSSEPEKAAMHAYGRYVDIFDKRCVFASDT 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2809g00042 452 Gene3D - 110 211 IPR012340 -
Gabi2809g00042 452 CDD RPA1_DBD_C 319 423 IPR047192 -
Gabi2809g00042 452 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 115 IPR045109 GO:0032454|GO:0033169
Gabi2809g00042 452 SUPERFAMILY Nucleic acid-binding proteins 110 208 IPR012340 -
Gabi2809g00042 452 Pfam Domain of unknown function DUF223 144 233 IPR003871 -
Gabi2809g00042 452 Pfam Replication factor-A C terminal domain 321 417 IPR013955 -
Gabi2809g00042 452 CDD RPA1_DBD_A_like 120 204 - -
Gabi2809g00042 452 SUPERFAMILY Nucleic acid-binding proteins 303 423 IPR012340 -
Gabi2809g00042 452 Gene3D - 284 425 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2809g00042 Gabi-Chr2809 352371 357038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2809g00042 325 413 Core DNA Replication Machinery Family AT5G61000 30.000 2.19e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2809g00042 - K15601 vun:114187234 176.407