Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2809g00040 ATGGAGGATCAAATCCACGGCCACACTCGAAGAACAAACCCAACTTCCACCACGTGCTTAAAGCTCTTCGGCTTCAGCGTCCACGAAGACATGGACGAAGAAGCAGCGCTTGAAGACGCCTCTGACTCAATCGCCAAGCCCACTTCCTCCTCCGATTCGCCGGACTCCGGCGCCGGAGATGGTGGCGCCGTCGGATTTCCCCCTTCATCCGGCGACCGGAAATACGAGTGCCAGTACTGTTACCGAGAGTTCGCAAACTCACAAGCACTTGGTGGGCACCAGAACGCGCACAAGAAAGAGCGCCAACAGCTAAAGCGCGCGCAGTTACAGGCCTCAAGAAACGCCGCCGTTTCGTTCGTTCGGAACCCCATCATCTCCGCTTTCGCCCCGCCGCCGCATCTCCTCAGTCCTCCGGGACAAGTGGTTGTGCCGGCGTCCGCGCCGTCGTGGGTCTACATGCCGCCACGTGCTGCGCCTCCTCCCTTCCACGTGTCGGTTTCACACGGTTGTGTGTTCCCGTCGGCGAACAACAATAACGGCATCGGTAACTGTAACGGCGGTGGTAACTACAGCATTATAACGGGTGCGAGATCCGCGGGTGCAGGGGTGTTACCGTACGTTGGCGGGGTAGGGGATTCCTCACCTGCATTGTCAACTATGGGCTCGCAAGTACAGGCCCGGGCCCAGTACGGGAGGGTTGATGGGCCTTCATTGGGTCGATTCTCCAAAGTAGATGTGGGGCCCAGTTTTGATGATGGGTTTGGCTTGGATTTGCACCTTAGCCTGGCCCCGCCATGA 798 0.5877 MEDQIHGHTRRTNPTSTTCLKLFGFSVHEDMDEEAALEDASDSIAKPTSSSDSPDSGAGDGGAVGFPPSSGDRKYECQYCYREFANSQALGGHQNAHKKERQQLKRAQLQASRNAAVSFVRNPIISAFAPPPHLLSPPGQVVVPASAPSWVYMPPRAAPPPFHVSVSHGCVFPSANNNNGIGNCNGGGNYSIITGARSAGAGVLPYVGGVGDSSPALSTMGSQVQARAQYGRVDGPSLGRFSKVDVGPSFDDGFGLDLHLSLAPP 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2809g00040 265 PANTHER ZINC FINGER PROTEIN 5 7 264 IPR044299 GO:0010090
Gabi2809g00040 265 MobiDBLite consensus disorder prediction 33 69 - -
Gabi2809g00040 265 Pfam C2H2-type zinc finger 75 100 - -
Gabi2809g00040 265 SUPERFAMILY beta-beta-alpha zinc fingers 71 102 IPR036236 -
Gabi2809g00040 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Gabi2809g00040 265 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Gabi2809g00040 265 Gene3D Classic Zinc Finger 64 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2809g00040 Gabi-Chr2809 324848 325784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2809g00040 12 264 C2H2 Transcription Factor Family AT1G68360 47.426 4.46e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2809g00040 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2809g00040 - - tpra:123911684 374.4