Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2809g00035 ATGGCACCACCACCACCTTCTCTTTTCATTATATACGCCACCATCTTCTCATTATCCTTCCACCACTTCTTCCTCCTCCTTCAAGCCTCCACTAACCACCCAGATTCCCAACCACTAATGGCATTCAAAACCGCTTCCGACACACACAACAAACTCACCACATGGAACTCCACCACCGACCCATGCACCACCTGGGACGGTGTCTCCTGCCTCAGGAACCGCGTCTCACGTCTCGTCCTCGAAGACCTCGACCTCCAAGGCTCCATCGAACCCTTAACCTCTCTCACTCAGCTCCGATTACTGAGCCTCAAACGCAACCGTTTTAACGGTTCCATTCCCAGCCTAACCAACCTCACTGCACTCAAGCTTCTCTTCCTCTCTCACAACCAGTTTTCCGGTGAGTTCCCCGCCACCGTTACGTCGCTCTCCCGCTTGTACCGTCTCGATCTGTCCTACAACAACCTCTCCGGCGATATTCCGGTGACGGTCAACCGTTTGACCCACCTTCTCACCCTCCGCATCGATGGGAACCAAATCCACGGTCACATTCCCAATATAAACCTCTCCAATCTTCAAGACTTCAACGTCTCCGATAACCGCCTCTCGGGTCACATACCCGAATCACTTTCGGGTTTTCCCGGATCCGCTTTCGGGCAAAACCCGTCTCTTTGCGGAGCCCCATTGCAGAAATGTAAAGACGTTCCAGCCCTTGCTTCGCCGTTGTTGCCTCGCAACAACACCCCAACAACAAATGTTCAATCATCCCCGAGTTCAATGCCGGTACCCGGAAACCCGACCCGAGAAAACGGAGCTCCGAGAATGGGCCCGATGGTTTTAATCGCCATTGTCCTCGGCGATGTTTTGGTGCTGGCAGTAGTGTCCCTGCTTCTCTACTGCTACTTCTGGCGAAAAGTGGAGTCGAATTCGAAGCCTGTGGAGGGTGAAAAGATGGTTTATTCGGCGAGTCCTTACCCGGGTCAAACCGGATTCGAGAAGGGTCAAATGGTGTTCTTCGAAGGGATGAAGAGGTTTGAGCTAGAGGACTTGCTTCGTGCCTCTGCGGAAATGCTTGGGAAGGGTGGGTTTGGCACTGCTTACAAAGCTGTTCTTGACGATGGCAGTGTTGTTGCAGTGAAGAGACTGAGGGATGCTCAGATTGGAGGGAAGAAAGAGTTCGAACAACAAATGGAAGTTCTGGGAAGGTTAACACACCCCAACATTGTTAGCTTGAGGGCTTACTATTTTGCAAGAGATGAGAAGTTGCTTGTCTCTGATTACATGCCCAATGGTAGCTTGTTCTGGCTCATTCACGGCAACCGAGGACCCGGGCGAACCCCAATGGACTGGACCACGAGGCTCAAGATAGCAGCTGGAGCGGCACGTGGTGTGGCCTTCATTCATAACAATAACCTCACCCACGGTAATATCAAATCCACCAATGTCCTCATTGACGTGGCGGGAAATGCACGCGTGGCAGATTTTGGGCTCTTCATCTTCGCGGGCCCATCATCAAACGGGAGATCCAACGGCTACCGTGCTCCCGAGGCATCCGACGGTCGAAAACAGTCCCAGAAGTCTGACGTGTACTCCTTTGGCGTTCTACTGATGGAGATGCTGACGGGGAAGTGTCCCTCCGCCGTGGACGGCGGCGCGGTGGTGGACCTCCCTAGGTGGGTCCAGTCCGTGGTGAGGGAGGAGTGGACCGCTGAGGTGTTTGATCTTGAGCTGCTGAGGTACAAGGATATTGAGGAGGAGATGGTCGCGCTGCTGCAGATAGCTATGACGTGTGCTGCTGCTGCACCTGATCAACGTCCCAAGATGTGCCACGTGGTCAAGATGATCGAGGAGTTGCGTGGGTTTGAGGTGTCACCGAGTCATGACACGTTGGACTCGGTGTCTGAGTCACCTTCCGTGTCTGAAGATGCACGTGGAGGTGGAACTAATAGGTAA 1950 0.5338 MAPPPPSLFIIYATIFSLSFHHFFLLLQASTNHPDSQPLMAFKTASDTHNKLTTWNSTTDPCTTWDGVSCLRNRVSRLVLEDLDLQGSIEPLTSLTQLRLLSLKRNRFNGSIPSLTNLTALKLLFLSHNQFSGEFPATVTSLSRLYRLDLSYNNLSGDIPVTVNRLTHLLTLRIDGNQIHGHIPNINLSNLQDFNVSDNRLSGHIPESLSGFPGSAFGQNPSLCGAPLQKCKDVPALASPLLPRNNTPTTNVQSSPSSMPVPGNPTRENGAPRMGPMVLIAIVLGDVLVLAVVSLLLYCYFWRKVESNSKPVEGEKMVYSASPYPGQTGFEKGQMVFFEGMKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGSVVAVKRLRDAQIGGKKEFEQQMEVLGRLTHPNIVSLRAYYFARDEKLLVSDYMPNGSLFWLIHGNRGPGRTPMDWTTRLKIAAGAARGVAFIHNNNLTHGNIKSTNVLIDVAGNARVADFGLFIFAGPSSNGRSNGYRAPEASDGRKQSQKSDVYSFGVLLMEMLTGKCPSAVDGGAVVDLPRWVQSVVREEWTAEVFDLELLRYKDIEEEMVALLQIAMTCAAAAPDQRPKMCHVVKMIEELRGFEVSPSHDTLDSVSESPSVSEDARGGGTNR 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2809g00035 649 Gene3D Ribonuclease Inhibitor 34 186 IPR032675 -
Gabi2809g00035 649 ProSiteProfiles Protein kinase domain profile. 351 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2809g00035 649 MobiDBLite consensus disorder prediction 242 264 - -
Gabi2809g00035 649 SUPERFAMILY Protein kinase-like (PK-like) 355 614 IPR011009 -
Gabi2809g00035 649 MobiDBLite consensus disorder prediction 624 649 - -
Gabi2809g00035 649 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 618 IPR046959 -
Gabi2809g00035 649 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Gabi2809g00035 649 CDD STKc_IRAK 357 617 - -
Gabi2809g00035 649 Gene3D Ribonuclease Inhibitor 187 232 IPR032675 -
Gabi2809g00035 649 FunFam pollen receptor-like kinase 1 324 426 - -
Gabi2809g00035 649 Gene3D Transferase(Phosphotransferase) domain 1 427 632 - -
Gabi2809g00035 649 MobiDBLite consensus disorder prediction 626 649 - -
Gabi2809g00035 649 MobiDBLite consensus disorder prediction 239 269 - -
Gabi2809g00035 649 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 427 626 - -
Gabi2809g00035 649 FunFam Nuclear pore complex protein NUP107 33 185 - -
Gabi2809g00035 649 Pfam Protein kinase domain 354 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2809g00035 649 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Gabi2809g00035 649 Gene3D Phosphorylase Kinase; domain 1 328 426 - -
Gabi2809g00035 649 SUPERFAMILY L domain-like 43 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2809g00035 Gabi-Chr2809 280554 283956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2809g00035 35 649 Receptor kinase-like Gene Family AT1G68400 64.715 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi2809g00035 Pkinase 8.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2809g00035 - - vum:124834036 879.396