LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2809g00032	ATGAGTAACAATGGCCAAACTACTGGTGCTGGTAACAACATCAGGGGTTTGATCTGCAACGCTGGTGCTGGTGCCGCTGCTGGGGCTATAGCGGCTACTTTTGTATGCCCTTTGGATGTGATCAAGACAAGGCTACAAGTTCATGGCCTTCCTCCTGCGCAGAAAGGTAGTATCATTGTCTCGAGCTTGAAGAATATAGTAAGGACTGAAGGCTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATACTGGCATTACTTCCAAACTGGGCAGTTTACTTCACAGTCTATGAGCAATTAAAGGGCCTGCTTCGTTCACATGCAGATGGTTGCAACGAACTCTCAACTATTGGAAATATTATAGCTGCTGCCGGTGCTGGGGCGGCAACTGCAATTTCTACAAATCCACTGTGGGTTGTTAAGACAAGACTCCAAACTCAAGGAATGAGGCCTGATGTTGTTCCTTACAAAAGTGTTCTTTCTGCTTTGACAAGGATTTCACGCGAGGAAGGCATGCGAGGACTATATAGTGGCATCGTGCCTTCCTTGGCTGGCGTAAGCCATGTTGCGATTCAATTCCCTGCATACGAAAAGATCAAGTCATACATGGCAGAAAAAGATAAAACAACTGTTGACAAGCTAAGTCCTGGGAGTGTGGCAATTTCATCATCAATTTCAAAAGTAATTGCCTCAGTAATGACTTATCCGCATGAGGTGATACGTTCGAGGCTGCAAGAACAAGGCCATGCCAAAAGTAATGGGACACGATATGCAGGGGTAGTTGATTGTACTAGGAAGGTGTTTCAAAAGGAAGGCATTGCAGGGTTTTATCGTGGTTGTGCAACCAATCTTTTAAGAACAACTCCGTCTGCTGTTATTACGTTCACCAGTTATGAGATGATACACAGGTTTTTGCGGCGGGTTATACCTCAGCCTAAGGACAAGGGGTATCCGCAAGGCCCTTCTAAATCCAATGAACTTAACAAGCCCAAACCAGAAGCTAGTGACATTAATATTAGAAATGGCACTGATTCGGGGCAATCACCATCTCAGTCTAACAAGAAAGCTTCATCAATTCCTCTTGGAAACAAAGAGCAGCTAACAAGACATTGA	1113	0.4492	MSNNGQTTGAGNNIRGLICNAGAGAAAGAIAATFVCPLDVIKTRLQVHGLPPAQKGSIIVSSLKNIVRTEGFRGMYRGLSPTILALLPNWAVYFTVYEQLKGLLRSHADGCNELSTIGNIIAAAGAGAATAISTNPLWVVKTRLQTQGMRPDVVPYKSVLSALTRISREEGMRGLYSGIVPSLAGVSHVAIQFPAYEKIKSYMAEKDKTTVDKLSPGSVAISSSISKVIASVMTYPHEVIRSRLQEQGHAKSNGTRYAGVVDCTRKVFQKEGIAGFYRGCATNLLRTTPSAVITFTSYEMIHRFLRRVIPQPKDKGYPQGPSKSNELNKPKPEASDINIRNGTDSGQSPSQSNKKASSIPLGNKEQLTRH	370

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2809g00032	370	Gene3D	Mitochondrial carrier domain	112	311	IPR023395	-
	Gabi2809g00032	370	Gene3D	Mitochondrial carrier domain	3	111	IPR023395	-
	Gabi2809g00032	370	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Gabi2809g00032	370	PRINTS	Mitochondrial carrier protein signature	129	147	IPR002067	GO:0055085
	Gabi2809g00032	370	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Gabi2809g00032	370	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Gabi2809g00032	370	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Gabi2809g00032	370	PRINTS	Mitochondrial carrier protein signature	223	245	IPR002067	GO:0055085
	Gabi2809g00032	370	SUPERFAMILY	Mitochondrial carrier	17	300	IPR023395	-
	Gabi2809g00032	370	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	18	310	IPR044712	GO:0006862\|GO:0055085
	Gabi2809g00032	370	Pfam	Mitochondrial carrier protein	113	205	IPR018108	-
	Gabi2809g00032	370	Pfam	Mitochondrial carrier protein	215	306	IPR018108	-
	Gabi2809g00032	370	Pfam	Mitochondrial carrier protein	20	106	IPR018108	-
	Gabi2809g00032	370	MobiDBLite	consensus disorder prediction	311	370	-	-
	Gabi2809g00032	370	FunFam	Nicotinamide adenine dinucleotide transporter 2, mitochondrial	16	305	-	-
	Gabi2809g00032	370	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	114	202	IPR018108	-
	Gabi2809g00032	370	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	214	304	IPR018108	-
	Gabi2809g00032	370	MobiDBLite	consensus disorder prediction	338	370	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2809g00032	Gabi-Chr2809	236533	241390	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2809g00032	1	364	Chloroplast and Mitochondria Gene Families	AT1G25380	63.441	2.89e-146	416

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2809g00032	K15115		-	gmx:100797064	568.926