LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2809g00031	ATGAGTAACAATGGCCAAACTACTGGTGCTGGTAACAACATCAGGGGTTTGATCTGCAACGCTGGTGCTGGTGCCGCTGCTGGGGCTATAGCGGCTACTTTTGTATGCCCTTTGGATGTGATCAAGACAAGGCTACAAGTTCATGGCCTTCCTCCTGCGCAGAAAGGTAGTATCATTGTCTCGAGCTTGAAGAATATAGTAAGGACTGAAGGCTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATACTGGCATTACTTCCAAACTGGGCAGTTTACTTCACAGTCTATGAGCAATTAAAGGGCCTGCTTCGTTCACATGATGGTTGCAACGAACTCTCAACTATTGGAAATATTATAGCTGCTGCCGGTGCTGGGGCGGCAACTGCAATTTCTACAAATCCACTGTGGGTTGTTAAGACAAGACTCCAAACTCAAGGAATGAGGCCTGATGTTGTTCCTTACAAAAGTGTTCTTTCTGCTTTGACAAGGATTTCACGCGAGGAAGGCATGCGAGGACTATATAGTGGCATCGTGCCTTCCTTGGCTGGCGTAAGCCATGTTGCGATTCAATTCCCTGCATACGAAAAGATCAAGTCATACATGGCAGAAAAAGATAAAACAACTGTTGACAAGCTAAGTCCTGGGAGTGTGGCAATTTCATCATCAATTTCAAAAGTAATTGCCTCAGTAATGACTTATCCGCATGAGGTGATACGTTCGAGGCTGCAAGAACAAGGCCATGCCAAAAGTAATGGGACACGATATGCAGGGGTAGTTGATTGTACTAGGAAGGTGTTTCAAAAGGAAGGCATTGCAGGGTTTTATCGTGGTTGTGCAACCAATCTTTTAAGAACAACTCCGTCTGCTGTTATTACGTTCACCAGTTATGAGATGATACACAGGTTTTTGCGGCGGGTTATACCTCAGCCTAAGGACAAGGGGTATCCGCAAGGCCCTTCTAAATCCAATGAACTTAACAAGCCCAAACCAGAAGCTAGTGACATTAATATTAGAAATGGCACTGATTCGGGGCAATCACCATCTCAGTCTAACAAGAAAGCTTCATCAATTCCTCTTGGAAACAAAGAGCAGCTAACAAGACATTGA	1110	0.4486	MSNNGQTTGAGNNIRGLICNAGAGAAAGAIAATFVCPLDVIKTRLQVHGLPPAQKGSIIVSSLKNIVRTEGFRGMYRGLSPTILALLPNWAVYFTVYEQLKGLLRSHDGCNELSTIGNIIAAAGAGAATAISTNPLWVVKTRLQTQGMRPDVVPYKSVLSALTRISREEGMRGLYSGIVPSLAGVSHVAIQFPAYEKIKSYMAEKDKTTVDKLSPGSVAISSSISKVIASVMTYPHEVIRSRLQEQGHAKSNGTRYAGVVDCTRKVFQKEGIAGFYRGCATNLLRTTPSAVITFTSYEMIHRFLRRVIPQPKDKGYPQGPSKSNELNKPKPEASDINIRNGTDSGQSPSQSNKKASSIPLGNKEQLTRH	369

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2809g00031	369	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Gabi2809g00031	369	MobiDBLite	consensus disorder prediction	310	369	-	-
	Gabi2809g00031	369	Gene3D	Mitochondrial carrier domain	3	111	IPR023395	-
	Gabi2809g00031	369	Gene3D	Mitochondrial carrier domain	112	311	IPR023395	-
	Gabi2809g00031	369	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	18	309	IPR044712	GO:0006862\|GO:0055085
	Gabi2809g00031	369	FunFam	Nicotinamide adenine dinucleotide transporter 2, mitochondrial	16	304	-	-
	Gabi2809g00031	369	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Gabi2809g00031	369	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085
	Gabi2809g00031	369	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Gabi2809g00031	369	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Gabi2809g00031	369	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Gabi2809g00031	369	SUPERFAMILY	Mitochondrial carrier	17	299	IPR023395	-
	Gabi2809g00031	369	MobiDBLite	consensus disorder prediction	337	369	-	-
	Gabi2809g00031	369	Pfam	Mitochondrial carrier protein	214	305	IPR018108	-
	Gabi2809g00031	369	Pfam	Mitochondrial carrier protein	112	204	IPR018108	-
	Gabi2809g00031	369	Pfam	Mitochondrial carrier protein	20	106	IPR018108	-
	Gabi2809g00031	369	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-
	Gabi2809g00031	369	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	213	303	IPR018108	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2809g00031	Gabi-Chr2809	236533	241390	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2809g00031	1	363	Chloroplast and Mitochondria Gene Families	AT1G25380	63.612	1.03e-147	420

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2809g00031	K15115		-	gmx:100797064	573.548