Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2809g00028 ATGAGATGGGTTTCCAAGGTTATTATACTAAGAATAGGTTTTGCTATTGTATTCCTAAGCGTGATCCCATTATGTTTGATAATTCTATTTGTCTATAAACGGGGATGCAGTCTTTCAGACGACCAAAACCCATCAAAAAATATTTATTGTGGCTCTAACTCAAATCCAATGCCAGAGGGTGCAAGTGTCTTCTTTGGGATCCCTATCTTCTCCTATACAGAGCTAGAGCAAGCAACAAATAATTTTGACGAAGCTAAAGAACTTGGAAGTGGGGGCTTTGGGACTGTTTACTATGGAAAGCTCCGGGATGGACGGGAAGTTGCTGTCAAGCGCCTATATGAGCAAAACTATAGACGTGTGGAACAGTTCATGAATGAAATAGAGATCCTCACTCGTTTGCACCACAGAAATCTTGTATCCCTTTATGGCTGCAGTTCTCGGCACAGCCATGAACTACTACTTGTGTATGAATATATTCCAAATGGCACTGTTGCTTGTCATCTCCATGGGGATTTGGTAAAGGCTGGCTTCTTGCCATGGCCTACACCAATGAAAATTGCCATCGAGACTGCAAGCGTGTTGACTTATCTGCATGCTTCTAACATCATTCACCGGGATGTGAAAACCAACAACATTCTCCTTGACAATAACTTTTGTGTTAAAGTTGCAGACTTTGGGCTTTCAAGACTGTTCCCCAACAATGTTTCCCATGTGTCCACGGCTCCACAAGGAACCCTTGGATACCTGGACCCAGAATATCACCGATGCTACCAGCTAACAAGCAAGAGCGATGTATATAGCTTTGGGGTCGTGCTTATTGAGTTAATATCATCTCTGCAAGCAGTTGACATAACCAGGGATACGGATGAGATTAACTTGTCAAATCTAGCCATAAAGAAGATTCAAAAGCGTGCATTTAGTGAACTGGTAGATCCTTCCCTTGGCTTTGAGTTAGATAAAGAGTTTAAAAGGAAAATACTCTCAGTGGCAGAATTGGCATTTCGGTGTTTGCAAGAGGACAAGGATTTGAGACCTTTAATGGTAGAAGTTTTGGAGGAGCTGGAAAGAATTGAAGGTGGGGATGATAAGCCTAAGCATATAGAGGAAGCAGATGTTCAAGGTGCTATGAACTCCCTGTAA 1140 0.4211 MRWVSKVIILRIGFAIVFLSVIPLCLIILFVYKRGCSLSDDQNPSKNIYCGSNSNPMPEGASVFFGIPIFSYTELEQATNNFDEAKELGSGGFGTVYYGKLRDGREVAVKRLYEQNYRRVEQFMNEIEILTRLHHRNLVSLYGCSSRHSHELLLVYEYIPNGTVACHLHGDLVKAGFLPWPTPMKIAIETASVLTYLHASNIIHRDVKTNNILLDNNFCVKVADFGLSRLFPNNVSHVSTAPQGTLGYLDPEYHRCYQLTSKSDVYSFGVVLIELISSLQAVDITRDTDEINLSNLAIKKIQKRAFSELVDPSLGFELDKEFKRKILSVAELAFRCLQEDKDLRPLMVEVLEELERIEGGDDKPKHIEEADVQGAMNSL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2809g00028 379 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 363 IPR044652 GO:0004672
Gabi2809g00028 379 SMART serkin_6 82 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2809g00028 379 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 54 158 - -
Gabi2809g00028 379 Gene3D Transferase(Phosphotransferase) domain 1 159 368 - -
Gabi2809g00028 379 FunFam Wall-associated receptor kinase-like 20 159 366 - -
Gabi2809g00028 379 ProSitePatterns Protein kinases ATP-binding region signature. 88 110 IPR017441 GO:0005524
Gabi2809g00028 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Gabi2809g00028 379 Gene3D Phosphorylase Kinase; domain 1 59 158 - -
Gabi2809g00028 379 Pfam Protein tyrosine and serine/threonine kinase 85 354 IPR001245 GO:0004672|GO:0006468
Gabi2809g00028 379 ProSiteProfiles Protein kinase domain profile. 82 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2809g00028 379 SUPERFAMILY Protein kinase-like (PK-like) 64 352 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2809g00028 Gabi-Chr2809 229487 232718 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2809g00028 10 363 Receptor kinase-like Gene Family AT1G25390 61.878 7.38e-148 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi2809g00028 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2809g00028 - - aip:107643858 504.597