Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2809g00026 ATGGCTGCTCACTCAGTGTTTGGTTTCTTTTTTATACTCTGTTATTTTCTGTTTCTTGTCACAGCTGCAGCTCAAGAGGCAAAGCCTGAGGAGTGTCCAGAGTCTTTTCAGTGTGGACATGAAGTGGAATTCTCCTTCCCCGACACTATAAACCCAAAATGTAGCTTGCCCATAAATGTTTGTGACGACAACAATCAAATCAAAGAAATCCAACTGAAATACCAACCAACATATACAACTTATATCATCTCACCGGACGAGTACAATTCAATTTTCACCCATTACCCCAATTTTGAAACGCTCAGCTATGAAGCCAGTGTCGCAATTCCTCCAGGGCCTACTATTACGCCTTTTCCGATCCTTAACAACATTCCTTTCTCCAAATGCATCCATATCTCCAATGACAAGAGAACCCATACAAACATCTCCATGTATAGAAAATGTCCTGACTATGCATACTTTCCTTCTGAACATCATGGTGATGATAGCGAGAACCACATTCTTCCATATGCATGTTTACTTGTTCAGCTTAGAACTGAACAAGTACCCAATTCCACTTGCCCGTGTCCATTCTTAATTTCTTTTCTCGAAATTGAATTGGAAAAGTCCGAGTTTTCTGAAGACTGTTGGTTCAAGGCGCCACCTGACAAGAGACGGGATTTGAAGGCTACGATAATCGGTCTTTCAATTGCGTTGGCAAGCGTGATTACAATTGCCTTGTTTGTTATTCTTTTGATGTACAAACAAAGACACAAATCTTCAGGTGTCCAAAACCAACCAAGAAACACTTATCCTGGTCCCTTCAGCAGAACAACAAACCCAGAAAGTGGAGCTGTCTACTTTGGGGTCCCTGTCTTCTCCTATGAGGAGCTCCAAGAGGCAACAAACAATTTTGATCAAGCTAGAGAGCTTGGAGAAGGAGGCTTTGGGACTGTTTACTACGGAAAGCTTCGAGATGGACGTGAAGTAGCAGTGAAGCGCCTATACGAGCGCAACACCAGGCCAGTAGAATCGTTCATCAATGAAATTCAGATCCTCACGCGCTTGCGCCACAGAAATCTTGTATCTCTCTATGGCTGCACTTCACGTCACAGTCGTGAGTTACTGCTAGTATATGAATATATCCCAAATGGCACTGTTAGTTGCAATCTCCATGGTGATAAAGCAAAGCCTGGCTTATTGCCATGGCCCGTGAGGATGAAAATTGCCATAGAGACTGCTAGTGCATTGACTTATCTCCATGCTTCTGACATCATTCACCGAGACGTGAAAACCAGCAACATTCTCCTGGACAATAGCTTTTGTGTTAAAGTTGCAGATTTTGGGCTTTCAAGACTGTTCCCCAATGATGTCACACACGTCTCCACAGCTCCACGGGGAACCCCAGGTTATGTTGACCCAGACTATCGCATATGCTACCAGCTTACAAGCAAGAGCGATGTATATAGCTTTGGAGTTGTTCTTGTTGAGCTAATATCGTCTTTGCCAGCAGTTGATATGAACAGGGACAAGGATGAGATTAAGTTGGCAAAGCTAGCCATTAGGAAGATTCAAAAAAGGGCATTTTGTGAGTTGGTTGATCCTTCCCTTGGTTTCCAGTCAGATGACAAATTAAGAAGGATGATTATTTCAGTGGCAGAATTGGCTTTCCAGTGTTTGCAAGGGGACAAGGAATTGAGACCCTCTATGGGTGAAGTACTGGAGGTGCTGCAGAGAATCACAAGTGGGAATGATGAGCCAGGGAATCATGAGGGAATTGATGTTCATGGTGCTAGGATTTCACAAAGTTATGTATACCCGTCACTTCCAAACACTCTGGAGAAGCCACAGCGCCTTCACCAAACACTCTGA 1851 0.4354 MAAHSVFGFFFILCYFLFLVTAAAQEAKPEECPESFQCGHEVEFSFPDTINPKCSLPINVCDDNNQIKEIQLKYQPTYTTYIISPDEYNSIFTHYPNFETLSYEASVAIPPGPTITPFPILNNIPFSKCIHISNDKRTHTNISMYRKCPDYAYFPSEHHGDDSENHILPYACLLVQLRTEQVPNSTCPCPFLISFLEIELEKSEFSEDCWFKAPPDKRRDLKATIIGLSIALASVITIALFVILLMYKQRHKSSGVQNQPRNTYPGPFSRTTNPESGAVYFGVPVFSYEELQEATNNFDQARELGEGGFGTVYYGKLRDGREVAVKRLYERNTRPVESFINEIQILTRLRHRNLVSLYGCTSRHSRELLLVYEYIPNGTVSCNLHGDKAKPGLLPWPVRMKIAIETASALTYLHASDIIHRDVKTSNILLDNSFCVKVADFGLSRLFPNDVTHVSTAPRGTPGYVDPDYRICYQLTSKSDVYSFGVVLVELISSLPAVDMNRDKDEIKLAKLAIRKIQKRAFCELVDPSLGFQSDDKLRRMIISVAELAFQCLQGDKELRPSMGEVLEVLQRITSGNDEPGNHEGIDVHGARISQSYVYPSLPNTLEKPQRLHQTL 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2809g00026 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Gabi2809g00026 616 Gene3D Phosphorylase Kinase; domain 1 271 374 - -
Gabi2809g00026 616 SUPERFAMILY Protein kinase-like (PK-like) 277 574 IPR011009 -
Gabi2809g00026 616 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 580 IPR044652 GO:0004672
Gabi2809g00026 616 ProSiteProfiles Protein kinase domain profile. 298 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2809g00026 616 Pfam Protein kinase domain 299 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2809g00026 616 FunFam receptor-like protein kinase FERONIA 269 374 - -
Gabi2809g00026 616 Gene3D Transferase(Phosphotransferase) domain 1 375 579 - -
Gabi2809g00026 616 CDD STKc_IRAK 304 573 - -
Gabi2809g00026 616 FunFam Wall-associated receptor kinase-like 20 375 582 - -
Gabi2809g00026 616 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Gabi2809g00026 616 SMART serkin_6 298 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2809g00026 616 Coils Coil 500 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2809g00026 Gabi-Chr2809 225044 227690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2809g00026 226 573 Receptor kinase-like Gene Family AT1G25390 61.538 2.20e-141 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi2809g00026 Pkinase 5.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2809g00026 - - var:108334729 641.728