Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2809g00025 ATGAACTCAAGATCCCTTATTCACTCATACATCATCTGCTTCTCTCTCCTAACCACGATCACTTTCTCTTCCGTGGATCCAAAGTTCGAAGCTTGCAAGCCCAAAACCTGTGGGAATGGTCAAAACATAAGCTTCCCGTTCTACATCCAAGGGAAACAAGAACCCTTTTGTGGGTATCCAGGTTTTGAGCTCACTTGTGCTCACAATGGCTTCCCAATTCTCAATTTAATCGATACCCAATACACCATCCATAAAATTTTCTACACAAACCACACACTCAGAGTGTCCAACCCTGTGTTTTCAGAATCAACCACCTCTTCATGTATTTCTCCAACTCAGAACCTCACAGTTGGCAAGTACAGGTTCCGACTTGCTGCCAACCAAAAGGACATGTTGTTGTTCTATGGCTGCGACTTAACATCGCTTCCTGAAGGGATGCAAGAGCACAACATTGGGTGTTCTGCAGAAAATGAAACGAGTTCAGTCGTGGCCTTGTATAGGGAGGATCAAGATTTGAGCATAGCATCGAAGAATTGCAAAGGTAGAATGGTGAACACAAGTGTAGAAGATGAGAAAGGTGGGAACATTAAAGAGGCACTGAGGAAAGGGTTTGTGTTGGATTGGAATGCGAGTAATTGCAGCGAGTGCACGAGCAGTGGAGGAAGATGCGGGTTCGACACTGACCCTGTTACATACGCTTTCAGATGCTATTGTCCTGATAGAGTTCATGCTGCGAGATGTGATCCAAAGCCAAAGAGGTTGAGTAAGGCAGGAAAACTAGGCGTAGGTTTAGGTGTTGGGCTCCTAAGCATCTTGATAATTGGGTTGCTCCTTCTAGTTTACAAACGAAAACATGGAGGTCAATTCCAAACAAGAAATACTTACCCAAATCCCACCTCTAATACAGATATAGAGAGTGACAGTGCGTACTTTGGAGTTCCCCTCTTCTCCTACAAGGAGCTTGCAGAAGCAACAAGCCATTTCGACCATGATAAACAAATTGGAGATGGAGGCTTTGGGACTGTCTACTATGGGAAACTCCGAGATCAACGGGAAGTTGCTGTCAAGCACTTATATGAGCACAACTACAGGCGTGTAGAGCAGTTCATGAATGAAGTTCAAATCCTCACACGTTTGCGCCATAGAAATCTTGTGTCACTCTATGGCTGCACTTCGCGTCACAGCCGTGAACTCCTGCTTGTGTATGAATATATTCCAAATGGCACAGTTGCTTGTCATCTCCATGGAGAATTGGCAAAGCCTGGCTTACTACCATGGTCTATAAGAATCAAAATTGCCATTGAGACTGCGAATGCATTGGCTTATCTTCATGCTTCTGAAATCATTCACCGTGATGTGAAAACCAGCAACATTCTACTTGACAACAGTTTTTGTGTCAAAGTTGCAGACTTTGGCCTTTCAAGGTTATTTCCCAATGATGTCACCCATGTCTCAACCGCACCACAAGGGACCGCAGGTTATGTTGATCCAGAATATTATCAATGCTACCAGCTTACTAACAAGAGTGATGTGTTTAGCTTTGGAGTGGTGCTCATTGAGCTAATATCATCTAAGCCAGCTGTGGATACAAACAGGCTCAAGGATGAAATTAACTTGTCAAATTTAGCCATAAAGAAGATTCAAGAAAAAGAATTTAGTGAGCTGGTTGATCCTGACATTGGTTTTGATTCAGACAATGAGATCAAGAGGATGATAGTTTCGGTGGCAGAGTTGGCTTTTCGATGTTTGCAAGGGGACAAGGAATTGAGACCTTCCATGGATGAAGTATTGGAGGTGCTGAGGAGAATTGAAAGCGGGAAGGATGAGCCAGAGCATCTAGAAGAAGCAGACGTTCATGGTTCTGGGGTTTCTTCTCATAGTAATGTATATCCACCATTGCCAACCTCACCAGAAAAGATACCTTCTTCACCAATAACCGTTACTGACAGCTGGGAAAGTAAATCTACTACGCCTAGTGTCAGTTGTTAA 1989 0.4359 MNSRSLIHSYIICFSLLTTITFSSVDPKFEACKPKTCGNGQNISFPFYIQGKQEPFCGYPGFELTCAHNGFPILNLIDTQYTIHKIFYTNHTLRVSNPVFSESTTSSCISPTQNLTVGKYRFRLAANQKDMLLFYGCDLTSLPEGMQEHNIGCSAENETSSVVALYREDQDLSIASKNCKGRMVNTSVEDEKGGNIKEALRKGFVLDWNASNCSECTSSGGRCGFDTDPVTYAFRCYCPDRVHAARCDPKPKRLSKAGKLGVGLGVGLLSILIIGLLLLVYKRKHGGQFQTRNTYPNPTSNTDIESDSAYFGVPLFSYKELAEATSHFDHDKQIGDGGFGTVYYGKLRDQREVAVKHLYEHNYRRVEQFMNEVQILTRLRHRNLVSLYGCTSRHSRELLLVYEYIPNGTVACHLHGELAKPGLLPWSIRIKIAIETANALAYLHASEIIHRDVKTSNILLDNSFCVKVADFGLSRLFPNDVTHVSTAPQGTAGYVDPEYYQCYQLTNKSDVFSFGVVLIELISSKPAVDTNRLKDEINLSNLAIKKIQEKEFSELVDPDIGFDSDNEIKRMIVSVAELAFRCLQGDKELRPSMDEVLEVLRRIESGKDEPEHLEEADVHGSGVSSHSNVYPPLPTSPEKIPSSPITVTDSWESKSTTPSVSC 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2809g00025 662 SUPERFAMILY Protein kinase-like (PK-like) 310 604 IPR011009 -
Gabi2809g00025 662 CDD STKc_IRAK 334 603 - -
Gabi2809g00025 662 Pfam Wall-associated receptor kinase galacturonan-binding 32 96 IPR025287 GO:0030247
Gabi2809g00025 662 SMART serkin_6 328 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2809g00025 662 FunFam Wall-associated receptor kinase-like 20 405 612 - -
Gabi2809g00025 662 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 655 IPR044652 GO:0004672
Gabi2809g00025 662 ProSiteProfiles Protein kinase domain profile. 328 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2809g00025 662 MobiDBLite consensus disorder prediction 607 662 - -
Gabi2809g00025 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Gabi2809g00025 662 Pfam Protein kinase domain 329 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2809g00025 662 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Gabi2809g00025 662 Gene3D Transferase(Phosphotransferase) domain 1 405 615 - -
Gabi2809g00025 662 MobiDBLite consensus disorder prediction 640 662 - -
Gabi2809g00025 662 Pfam Wall-associated receptor kinase C-terminal 171 240 IPR032872 -
Gabi2809g00025 662 Gene3D Phosphorylase Kinase; domain 1 300 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2809g00025 Gabi-Chr2809 217634 224111 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2809g00025 28 661 Receptor kinase-like Gene Family AT1G25390 45.595 1.37e-168 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi2809g00025 Pkinase 7.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2809g00025 - - aip:107643858 932.939