Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2809g00014 ATGCATAATAAGGAGAATTGCTCGCCCTCCTCCAATGGCGGATTTGGCGCCACCGCCACCTGTCAAATGCAGTCAAACGGCGGCGTCTTCGATTCATTGTACTCATCGCTGTTCAGCGACGATCCGTCTCCTTCATCAGCCACCTGCAACAATGGCGGTGGCGTCTCGCTTCACCCGTACGAAGTCTTGAAATACACCACCGACTCGGGAATTCAGAAGCACCAGGACATGGTGAACCGCCACAGCATGTGCCTCAGCCGCCTCGTGGAAACTTCCAGGGAGCTCGAAGGCCTGCGAAAAGAGAACTTGCAGCTTCGCGATCTGAACCTGGTGCTGCAGAAGAGGCTGAGCCTCTTCATGCTGGAGAATCGATTCGGAAATACGACGCCGTTTGATCTTGCGCAGGGGTTCGGCGGCCTCGACATTGGTAAAGAGAACATGTACGCCGATTGGAACAATATTAATGAGAATAAGGAGCAGGAGGTTTTGGAAGATAGTCCAACTAGCGTGATTGAGAACAATGGTGTTGAAGTGGAGCGATTCTCTCTGCCAAAAAGCATATCTGTGAGGTCGAACGGTTACTTGAAGATGATGTCTCAGTGTATGGGTGCTGGTGTTGGTGCTGGTGCCAGCAATGGAAGTCGCACCAAGGGGACTACTCGCTCACGCATCTCATCGACTACTCCACCTGATGTTGTTCAAAAGGTACATGTGCGTGGAGGGAATAAGGAGGAAGAGCCTCTTGAGATGGTGGTGTATAATCAAGGAATGTTCAAGACAGAGCTGTGTAACAAATGGCAGCAGACTGGGACATGCCCATACGGTGACCATTGCCAATTTTCTCACGGTATTGGGGAGCTCCGCCCAGTCATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTATGTCCATATGGCCATAGATGTCATTTCCGCCATGCTCTCACTGAAGAAGAGAAAGCCATAGCAGAGAGTAAGCCCAGATAA 1008 0.5149 MHNKENCSPSSNGGFGATATCQMQSNGGVFDSLYSSLFSDDPSPSSATCNNGGGVSLHPYEVLKYTTDSGIQKHQDMVNRHSMCLSRLVETSRELEGLRKENLQLRDLNLVLQKRLSLFMLENRFGNTTPFDLAQGFGGLDIGKENMYADWNNINENKEQEVLEDSPTSVIENNGVEVERFSLPKSISVRSNGYLKMMSQCMGAGVGAGASNGSRTKGTTRSRISSTTPPDVVQKVHVRGGNKEEEPLEMVVYNQGMFKTELCNKWQQTGTCPYGDHCQFSHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEEEKAIAESKPR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2809g00014 335 ProSiteProfiles Zinc finger C3H1-type profile. 257 285 IPR000571 GO:0046872
Gabi2809g00014 335 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
Gabi2809g00014 335 Coils Coil 88 115 - -
Gabi2809g00014 335 MobiDBLite consensus disorder prediction 207 229 - -
Gabi2809g00014 335 PANTHER CCCH ZINC FINGER/TIS11-RELATED 74 329 IPR045877 GO:0003729
Gabi2809g00014 335 SUPERFAMILY CCCH zinc finger 292 322 IPR036855 GO:0046872
Gabi2809g00014 335 SUPERFAMILY CCCH zinc finger 254 289 IPR036855 GO:0046872
Gabi2809g00014 335 FunFam Zinc finger protein 36, C3H1 type-like 1 291 327 - -
Gabi2809g00014 335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 258 283 IPR000571 GO:0046872
Gabi2809g00014 335 FunFam zinc finger CCCH domain-containing protein 15-like 251 290 - -
Gabi2809g00014 335 SMART c3hfinal6 295 322 IPR000571 GO:0046872
Gabi2809g00014 335 SMART c3hfinal6 257 284 IPR000571 GO:0046872
Gabi2809g00014 335 Gene3D - 291 327 - -
Gabi2809g00014 335 Gene3D - 252 290 - -
Gabi2809g00014 335 MobiDBLite consensus disorder prediction 212 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2809g00014 Gabi-Chr2809 106728 109543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2809g00014 63 330 C3H Transcription Factor Family AT1G68200 52.190 2.68e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2809g00014 zf-CCCH 1.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2809g00014 K18753 - gmx:100796550 408.297