Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2809g00012 ATGGCACCTTGGATCTCATTCCTCCAGAGATTCGTGTTTGTAGAACTTCAGGAAATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACAAGAACTGTCATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAATCGATGCGACTAGGGAACAATGAATGCCCTGCTTGCCGCACACATTGTGCAAGTCGTCGTTCTTTGAGAGATGATCCAAACTATGATGCCCTTATTGCCGCTTTATATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAATCGCAATAAGCAGATTCAAGCTTTGATAGCAAAAGTAGTTCAACGGCAATCTGAAGCACTCGTTAAGAGACGTAGAGATACACCCGGAACATTTGTGACAAGATCACAGCGTAATCCACGAAACGTTAATTCAAGGAGACAAAACCAAGCGATTGATCTTCAAGGATCTGAAGATAATGAGGAGGAAAATGACAACAATGAAAAAGACTCATCTTCTGCTGATGAGCGGTGTACAGAACTCCGGCAGAGAAGGCGAAAGAGATGGACCAGAGTTCGTCCCTCTCAGCCATCATCATCGATGGCAAGTCCTGATGGCGGATGCATAGAAAGTGATATGGATATAAGTAGAGAAAATCGAGGAATTTCAAGGCAGGTGTCAAAACCTCGAAAGCTTACTTGGGGACGGGGAGGTTTTAGAAGTCACACAAGGCATGGAGGCGGTGGTGGTAGCAGTAGCAAAAGTTCCCGCAGTAGTCGATTGTCTAAGTTGGTTGATCATCTCCGAAGCTTGGATGAAAACACTAATGAGTTAGATGTCCATCTCATGCTTGTTTCTCTGGACAAACAAAGTACACCAAGTTTGCAGCAACCACACCTTTGCTGTCGACCAACTTTGTCTGTCAAGCATCTTTACGAATATGTTGCTCTTCAGACACCTTTGCCAGTTGAAGAAGTTGAGATACTGGCAGTTAAAGGATGGTGCAGTTCATATTGTGATAAATCATCAGATGAGAATTCAGCCCTGATACATGATGAGCTAACAGCGTTGGTTATAGATCCACGCAAAGATGAACTGGAAATTTTGCAAGGACATGAATCTCTGGCAGGGCTTAGATCCAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGCAGAAGGAAGCATTATAG 1218 0.4319 MAPWISFLQRFVFVELQEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQALIAKVVQRQSEALVKRRRDTPGTFVTRSQRNPRNVNSRRQNQAIDLQGSEDNEEENDNNEKDSSSADERCTELRQRRRKRWTRVRPSQPSSSMASPDGGCIESDMDISRENRGISRQVSKPRKLTWGRGGFRSHTRHGGGGGSSSKSSRSSRLSKLVDHLRSLDENTNELDVHLMLVSLDKQSTPSLQQPHLCCRPTLSVKHLYEYVALQTPLPVEEVEILAVKGWCSSYCDKSSDENSALIHDELTALVIDPRKDELEILQGHESLAGLRSKCISKREHLILAYRQKEAL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2809g00012 405 Coils Coil 91 122 - -
Gabi2809g00012 405 Pfam Zinc finger, C3HC4 type (RING finger) 24 64 - -
Gabi2809g00012 405 ProSitePatterns Zinc finger RING-type signature. 41 50 IPR017907 -
Gabi2809g00012 405 PANTHER OS11G0578200 PROTEIN 10 403 IPR044592 -
Gabi2809g00012 405 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Gabi2809g00012 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 88 IPR013083 -
Gabi2809g00012 405 SMART ring_2 25 64 IPR001841 -
Gabi2809g00012 405 CDD RING-HC_RING1-like 22 87 - -
Gabi2809g00012 405 MobiDBLite consensus disorder prediction 138 161 - -
Gabi2809g00012 405 MobiDBLite consensus disorder prediction 217 231 - -
Gabi2809g00012 405 SUPERFAMILY RING/U-box 15 96 - -
Gabi2809g00012 405 MobiDBLite consensus disorder prediction 126 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2809g00012 Gabi-Chr2809 80341 86565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2809g00012 17 88 C3H Transcription Factor Family AT3G23060 34.667 4.55e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2809g00012 K10695 - gmx:100776547 598.586