Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2809g00011 ATGCCTACCCAGAAGCGTTCTTTCTCTGACTCTGTTGACGATGGCGACACTTCGCAGCAGCACCTCTACCATCCCCGCCATGTTAAACAACAACCCCACCGTGACCCACACTTTAAACCCAACGAACAACAACAACAACAACAACAACAACAAGAACAAGAGCATCAGCCACATGAAGAAGATGAGGACGATCATGATGTTGAGCAGCAGCAGCAGCAGGAGGAGGAGCAACAAGAAGAAGAAGAAGAAGAAGAAGAACAACAACAACAAGAAGAAGCAGGGCAACAACATAACCACGACAAGGACAAACCACAGGATTCCGACGAAACCCCATCTTCTGGCTCCGAAGAAAAACCCGAATTCGTGTTTGTAGAACTTCAGGAAATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACAAGAACTGTCATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAATCGATGCGACTAGGGAACAATGAATGCCCTGCTTGCCGCACACATTGTGCAAGTCGTCGTTCTTTGAGAGATGATCCAAACTATGATGCCCTTATTGCCGCTTTATATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAATCGCAATAAGCAGATTCAAGCTTTGATAGCAAAAGTAGTTCAACGGCAATCTGAAGCACTCGTTAAGAGACGTAGAGATACACCCGGAACATTTGTGACAAGATCACAGCGTAATCCACGAAACGTTAATTCAAGGAGACAAAACCAAGCGATTGATCTTCAAGGATCTGAAGATAATGAGGAGGAAAATGACAACAATGAAAAAGACTCATCTTCTGCTGATGAGCGGTGTACAGAACTCCGGCAGAGAAGGCGAAAGAGATGGACCAGAGTTCGTCCCTCTCAGCCATCATCATCGATGGCAAGTCCTGATGGCGGATGCATAGAAAGTGATATGGATATAAGTAGAGAAAATCGAGGAATTTCAAGGCAGGTGTCAAAACCTCGAAAGCTTACTTGGGGACGGGGAGGTTTTAGAAGTCACACAAGGCATGGAGGCGGTGGTGGTAGCAGTAGCAAAAGTTCCCGCAGTAGTCGATTGTCTAAGTTGGTTGATCATCTCCGAAGCTTGGATGAAAACACTAATGAGTTAGATGTCCATCTCATGCTTGTTTCTCTGGACAAACAAAGTACACCAAGTTTGCAGCAACCACACCTTTGCTGTCGACCAACTTTGTCTGTCAAGCATCTTTACGAATATGTTGCTCTTCAGACACCTTTGCCAGTTGAAGAAGTTGAGATACTGGCAGTTAAAGGATGGTGCAGTTCATATTGTGATAAATCATCAGATGAGAATTCAGCCCTGATACATGATGAGCTAACAGCGTTGGTTATAGATCCACGCAAAGATGAACTGGAAATTTTGCAAGGACATGAATCTCTGGCAGGGCTTAGATCCAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGCAGAAGGAAGCATTATAG 1548 0.4419 MPTQKRSFSDSVDDGDTSQQHLYHPRHVKQQPHRDPHFKPNEQQQQQQQQQEQEHQPHEEDEDDHDVEQQQQQEEEQQEEEEEEEEQQQQEEAGQQHNHDKDKPQDSDETPSSGSEEKPEFVFVELQEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQALIAKVVQRQSEALVKRRRDTPGTFVTRSQRNPRNVNSRRQNQAIDLQGSEDNEEENDNNEKDSSSADERCTELRQRRRKRWTRVRPSQPSSSMASPDGGCIESDMDISRENRGISRQVSKPRKLTWGRGGFRSHTRHGGGGGSSSKSSRSSRLSKLVDHLRSLDENTNELDVHLMLVSLDKQSTPSLQQPHLCCRPTLSVKHLYEYVALQTPLPVEEVEILAVKGWCSSYCDKSSDENSALIHDELTALVIDPRKDELEILQGHESLAGLRSKCISKREHLILAYRQKEAL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2809g00011 515 MobiDBLite consensus disorder prediction 327 341 - -
Gabi2809g00011 515 PANTHER OS11G0578200 PROTEIN 50 513 IPR044592 -
Gabi2809g00011 515 MobiDBLite consensus disorder prediction 9 23 - -
Gabi2809g00011 515 Coils Coil 64 96 - -
Gabi2809g00011 515 Pfam Zinc finger, C3HC4 type (RING finger) 134 174 - -
Gabi2809g00011 515 MobiDBLite consensus disorder prediction 1 118 - -
Gabi2809g00011 515 MobiDBLite consensus disorder prediction 248 271 - -
Gabi2809g00011 515 MobiDBLite consensus disorder prediction 236 377 - -
Gabi2809g00011 515 SUPERFAMILY RING/U-box 125 189 - -
Gabi2809g00011 515 Coils Coil 201 232 - -
Gabi2809g00011 515 ProSiteProfiles Zinc finger RING-type profile. 135 175 IPR001841 -
Gabi2809g00011 515 CDD RING-HC_RING1-like 132 197 - -
Gabi2809g00011 515 MobiDBLite consensus disorder prediction 63 89 - -
Gabi2809g00011 515 MobiDBLite consensus disorder prediction 90 118 - -
Gabi2809g00011 515 SMART ring_2 135 174 IPR001841 -
Gabi2809g00011 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 205 IPR013083 -
Gabi2809g00011 515 ProSitePatterns Zinc finger RING-type signature. 151 160 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2809g00011 Gabi-Chr2809 80341 86813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2809g00011 127 198 C3H Transcription Factor Family AT3G23060 34.667 2.75e-07 51.2