Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2809g00009 ATGAGCAGTGTATGTGCTGATCAGCAACACAAGTTTCATTCTTCTCACCAACTCCTTTCCCCAAAAAAATCCCTAAGAGAAATTGACATCCCACCAAGGAAACTCCTTACTCGCCGGGCCGCCGCTGCCACACATGATGGCGCTGCTGTCGACATGTACTCTGATGAGACCATCCTGCAGAAATTCCTCCCTTACAACAATCTCGCCGACTCGGACTCCGATGACCCGTACTCATCCGACCACTTTCGGATGTATGAGTTTAAGGTCCGCCGGTGTACTCGCAGCCGAAGCCACGACTGGACAGACTGTCCTTTCGCACATCCGGGAGAAAAAGCCCGTCGCCGCGACCCGCGACGATATCATTACTCGGGTACCGTGTGTCCCGAGTACCGCCGCGGAGGATGCAGCCGCGGCGACGGCTGCGAATACTCTCACGGTGTATTCGAGTGCTGGCTGCACCCTACCAGGTACAGAACAGAAGCATGCAAAGACGGAAAAAACTGCAAGCGAAAGGTGTGCTTCTTCGCGCACACCCCTCGCCAGCTCAGAATTTTGTCATTAAATTCCAACACTGATTGTTCAAACAACAACATCACATGCAAGAAGAGCAACAAGTTCTTGAACCCTGCTTCGGGATCAAACAATAGCTGTTGTGTGTTCTGTTGTCATTGTGCTTCTGCTTCGCCAACTTCCACGCTTTACAACATGTCCCACAACTTTTCTCCGCCGCTGTCGCCGTCGTCATCTGCCTCGCCGCCTCTTTCTCCGGCATCGAAACGGGTTTCCACCATTTCTCGCTACGGTGCATCATGTTGTAGTGTGAATCATCATCATCATCATGGGGTGGTGAGCTACAAAGACGTTCTCACTGAGCTTATGAGTTCTTTGGAGGGTTTGAAATTCGGTGAGGGTTCCCCTGTTTCTGCTTCCAAAGCACCAAACCTGAACCTGCCTTGGCTTGATGTTTCTCTCAATTGTGAGGATCAGAAACAGTTCATTGTTTCGCCTTCGGTTTCTTCTTTCTTCTGTGAAGATCAGCAGCAACAGTTTATTCTTTCACCTTCAACTCAGACACCGACAAGCTCCAATGTTAAGTATTCGAACAGCAAAATTTTCAGCAATAATAATAATAATGATAATAAGGTTGTTGCTGCTGACATAAATGGCCCTGATCTCGGGTGGGTTAATGAGTTGCTGATGTAG 1203 0.4913 MSSVCADQQHKFHSSHQLLSPKKSLREIDIPPRKLLTRRAAAATHDGAAVDMYSDETILQKFLPYNNLADSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRGDGCEYSHGVFECWLHPTRYRTEACKDGKNCKRKVCFFAHTPRQLRILSLNSNTDCSNNNITCKKSNKFLNPASGSNNSCCVFCCHCASASPTSTLYNMSHNFSPPLSPSSSASPPLSPASKRVSTISRYGASCCSVNHHHHHGVVSYKDVLTELMSSLEGLKFGEGSPVSASKAPNLNLPWLDVSLNCEDQKQFIVSPSVSSFFCEDQQQQFILSPSTQTPTSSNVKYSNSKIFSNNNNNDNKVVAADINGPDLGWVNELLM 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2809g00009 400 Gene3D - 122 185 - -
Gabi2809g00009 400 SMART c3hfinal6 156 179 IPR000571 GO:0046872
Gabi2809g00009 400 SMART c3hfinal6 121 147 IPR000571 GO:0046872
Gabi2809g00009 400 ProSiteProfiles Zinc finger C3H1-type profile. 122 148 IPR000571 GO:0046872
Gabi2809g00009 400 FunFam Zinc finger CCCH domain-containing protein 66 79 147 - -
Gabi2809g00009 400 PANTHER UNKEMPT FAMILY MEMBER 38 399 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2809g00009 Gabi-Chr2809 66950 68271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2809g00009 77 296 C2H2 Transcription Factor Family AT5G12850 40.909 2.40e-54 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2809g00009 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2809g00009 K23047 - gmx:100787049 485.337