Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2809g00004 ATGAAGCGTTATGTTTATATCAATGATGATGAATCATCTCATGATCTTTACTGTGATAATCGTATATCAAACAGAAAATATACTTTATTGAACTTTCTTCCGAAAAATTTATGGGAACAGTTCAGCCGGTTCATGAATCAGTACTTTTTGCTGATAGCTTGCTTGCAGCTATGGTCTCTCATTACTCCAGTGAATCCAGCCAGTACATGGGGTCCACTTATCTTTATTTTTGCAGTCTCTGCATCAAAAGAGGCATGGGATGATTATAATAGATATCTTTCAGACAAAAAGGCAAATGAGAAGGAAGTGTGGGTTGTCAGGAAGGGCGTCAAGAAACTTATCCAAGCCCAGGATGTACATGTAGGTAATATAGTATGGCTACGTGAAAATGACGAAGTGCCTTGTGACCTTGTTTTGATTGGCACCTCTGATCCTCAAGGAGTTTGCTATATAGAGACTGCTGCACTGGATGGTGAAACTGATCTGAAGACACGGGTCTTACCTTCTGCTTGCATGGGAATCGATGTTGAACTATTGCACAAAATTAAGGGTGTAATTGAGTGTCCCAGTCCAGATAAAGACATCAGAAGATTTGATGCAAACATGCGGTTGTTCCCGCCATTTATTGATAATGATATATGCCCTTTAACCATTAAAAACACAATTCTTCAGTCATGTTACTTGAGAAACACTGAGTGGGCATGTGGAGTGGCTGTGTACACGGGCAATGAAACCAAACTGGGCATGAGTAGAGGTATCCCAGAACCAAAGCTCACTGCTATGGATGCCATGATTGACAAGTTGACTGGTGCTATATTTATTTTCCAAATTGTTGTTGTCATTGTTCTTGGCATAGCGGGTAATGTTTGGAAGGATACAGAAGCTAAGAAACAATGGTATGTTCTTTACCCTCATGAAGGCCCTTGGTATGAACTATTGATCATCCCTTTGCGGTTCGAGCTTCTTTGTTCCATCATGATACCCATTTCAATTAAGGTATCTCTGGATTTGATGAAGAGCTTGTATGCAAAGTTTATTGACTGGGATCATCAGATGATTGACCTAGAGACTAGTATTCCATCCCATGCAGCAAATACAGCGATAAGCGAGGACCTGGGACAAGTTGAGTACATTTTGACTGACAAAACAGGCACCCTCACTGAGAATAAGATGATATTTAGAAGATGTTGTATTAGTGGCATTTTCTATGGAAATGACAATGGAGATGCATTGAAAGATGTAGAGCTTCTCAATGCTGTTTCCAGTGGTTCTCCTGATGTTGTACGATTTCTTACTGTTATGGCAATATGTAATACTGTGATACCTACGCTAAGCAAAACTGGAGATATCTTGTATAAGGCACAGTCTCAGGATGAAGATGCTCTTGTTCAAGCTGCTGCTCGGATGCATATGGTTTTCTTCAATAAGAGTGGAAACATTCTAGAAGTCAAGTTCAATGCTTCAATACTTCAGTATGAAGTCCTGGAAACCTTAGAGTTCACCTCTGATAGGAAAAGAATGTCAGTAGTGTTGAAAGATTGCCAAAATGGAAAGATCCTTCTCCTGTCTAAAGGTGCAGATGAGGCTATTCTTCCATATGCTCGTGTTGGGCAGCAAACTCGGCACTTCATTGAAGCTGTAGAGCAATATGCTCACTTGGGATTACGTACGCTATGTTTGGCTTGGCGTGAGTTAAAGGGGGATGAATATCAAGAATGGTCTTTGATGTTTAAAGAGGCTAGTAGCACTTTGGTTGATAGGGAGTGGAGAGTAGCTGAGGTCTGCCAAAGAGTAGAACATGACTTGGAAATTCTTGGTGTAACAGCAATAGAGGATCGGTTACAGGATGGAGTTCCTGAAACAATAGAAACACTAAGAAAAGCTGGAATAAATTTTTGGATGCTAACAGGAGACAAGCAGAATACCGCAATACAAATTGCCCTGTCGTGTAATTTTATTTCCCCAGAACCGAAGGGACAGCTTCTATCAATTGATGGAAAAACAGAAGATGAGGTTCGAAGAAGTTTAGAGAGAGTGCTTCTTACAATGCGGATAACTACCTCAGAACCTAAGGATGTGGCTTTTGTTGTTGATGGCTGGGCCCTTGAGATTGCACTTAACCACTACCGAAAAGCTTTCACTGAGCTGGCAGTATTGTCAAGGACTGCCATATGTTGTCGTGTGACACCATCACAAAAAGCACAGCTTGTACAGATCTTAAAATCATGTGACTACAGAACATTAGCAATTGGTGATGGTGGGAATGATGTAAGGATGATACAACAAGCCGATATTGGTGTGGGCATCAGTGGAAGAGAAGGATTGCAGGCAGCAAGAGCGGCAGATTACAGTATTGGAAAGTTTAGATTCCTGAAAAGATTAATTCTGGTCCATGGCCGGTACTCCTACAACCGCACTGCATTTCTTTCTCAATATTCATTCTATAAGTCCCTACTGATATGTTTCATTCAAATCTTGCGTCTCCGGAACTAG 2493 0.4091 MKRYVYINDDESSHDLYCDNRISNRKYTLLNFLPKNLWEQFSRFMNQYFLLIACLQLWSLITPVNPASTWGPLIFIFAVSASKEAWDDYNRYLSDKKANEKEVWVVRKGVKKLIQAQDVHVGNIVWLRENDEVPCDLVLIGTSDPQGVCYIETAALDGETDLKTRVLPSACMGIDVELLHKIKGVIECPSPDKDIRRFDANMRLFPPFIDNDICPLTIKNTILQSCYLRNTEWACGVAVYTGNETKLGMSRGIPEPKLTAMDAMIDKLTGAIFIFQIVVVIVLGIAGNVWKDTEAKKQWYVLYPHEGPWYELLIIPLRFELLCSIMIPISIKVSLDLMKSLYAKFIDWDHQMIDLETSIPSHAANTAISEDLGQVEYILTDKTGTLTENKMIFRRCCISGIFYGNDNGDALKDVELLNAVSSGSPDVVRFLTVMAICNTVIPTLSKTGDILYKAQSQDEDALVQAAARMHMVFFNKSGNILEVKFNASILQYEVLETLEFTSDRKRMSVVLKDCQNGKILLLSKGADEAILPYARVGQQTRHFIEAVEQYAHLGLRTLCLAWRELKGDEYQEWSLMFKEASSTLVDREWRVAEVCQRVEHDLEILGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVRRSLERVLLTMRITTSEPKDVAFVVDGWALEIALNHYRKAFTELAVLSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQILRLRN 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2809g00004 830 SFLD p-type atpase 364 801 IPR044492 -
Gabi2809g00004 830 SUPERFAMILY Calcium ATPase, transduction domain A 100 248 IPR008250 -
Gabi2809g00004 830 PRINTS P-type cation-transporting ATPase superfamily signature 628 638 - -
Gabi2809g00004 830 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Gabi2809g00004 830 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Gabi2809g00004 830 PRINTS P-type cation-transporting ATPase superfamily signature 152 166 - -
Gabi2809g00004 830 FunFam Phospholipid-transporting ATPase 75 251 - -
Gabi2809g00004 830 Pfam haloacid dehalogenase-like hydrolase 646 768 - -
Gabi2809g00004 830 Pfam Phospholipid-translocating P-type ATPase C-terminal 778 825 IPR032630 -
Gabi2809g00004 830 FunFam Phospholipid-transporting ATPase 449 592 - -
Gabi2809g00004 830 Pfam Cation transport ATPase (P-type) 436 532 - -
Gabi2809g00004 830 SFLD Haloacid Dehalogenase 364 801 - -
Gabi2809g00004 830 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 4 825 - -
Gabi2809g00004 830 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 825 IPR023298 -
Gabi2809g00004 830 Gene3D - 74 251 - -
Gabi2809g00004 830 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
Gabi2809g00004 830 Pfam E1-E2 ATPase 99 292 - -
Gabi2809g00004 830 SUPERFAMILY HAD-like 374 805 IPR036412 -
Gabi2809g00004 830 Gene3D - 605 790 IPR023214 -
Gabi2809g00004 830 FunFam Phospholipid-transporting ATPase 602 789 - -
Gabi2809g00004 830 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 386 575 IPR023299 GO:0000166
Gabi2809g00004 830 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
Gabi2809g00004 830 NCBIfam phospholipid-translocating P-type ATPase 425 825 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Gabi2809g00004 830 Gene3D - 448 604 IPR023299 GO:0000166
Gabi2809g00004 830 NCBIfam HAD-IC family P-type ATPase 599 661 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2809g00004 830 NCBIfam HAD-IC family P-type ATPase 717 826 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2809g00004 Gabi-Chr2809 42272 54675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2809g00004 1 826 Primary Pumps ATPases AT5G44240 86.925 0.0 1522