Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2801g00020 ATGGATTCCGCTTCTGGTGAGTCACCTTCAATGGAATCAGAGTATTTGGTGAAACAAGAATTGGAGGAATTGCAGAAACAATTGGGGAAGAAGCAAAATTTTGAGGCTGCTGTTTCGTCTCTCAAATCCATGCTCCAACACAAATATCCATCAGCTTCTCCCTCTCTCAGAAAATCCTTTTATTTGGTTATATGCCGGGTTGCTACTGTGTTGAAGACAAGGTATACAGCACCGGGTTTCTGGAATGCTGGACTGGGCCTTTTTGAGCAGGCTCAGTTGCTTGTTTCTGAACCTTCTGAGAAGGAACACTTGAAGGCTTGCATTGCCCAGGCAAGGGAACATTTGCATCTAGGAGACAACCCATCACAAGCTTCGCAACTCGTAGAGAATCATGCAAACAGAGGATATCTTTTTGAGGGGCACCTTACAGTGGATCAAGAGCCACCACAGCCTCAATGGTTGGTGGAATCAAACCTCTTGAGCACAGCTGCTACACTATTTGCTGCTGAATCGTCTCAAGGTTCAGCTGCAAATGATACAACACCAGAAAATGCCGCAAATGTGCTTCAAGAGCTTATAAATAGATTGGAAGAAGTTGTGCCCCTGATGGATATAGATCCTGTAGCTCCAAAAGCCCCTCCTGCCAGTAAAGAAGTTGTGGCAAAACTTCCAGTCATCACTCTCACAGACGAAATCCTGGCTAATCTGGGGAAAGATGCAGAGTGTTCAATTTGCAGAGAAAACTTGGTTTTAAATGACAAAATGCAAGAGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGGATGAGCACAATTCTTGTCCAATCTGTCGATATGAGCTGCAAACTGATGATCGTGCCTATGAGAGCTGGAAGGAACGCGAAAAGGAAGCCGAAGAAGAGAGGAAAGGTGCCGAAAATGCCATTCGAGGTGGTGAATACATGTATGTTTAG 969 0.451 MDSASGESPSMESEYLVKQELEELQKQLGKKQNFEAAVSSLKSMLQHKYPSASPSLRKSFYLVICRVATVLKTRYTAPGFWNAGLGLFEQAQLLVSEPSEKEHLKACIAQAREHLHLGDNPSQASQLVENHANRGYLFEGHLTVDQEPPQPQWLVESNLLSTAATLFAAESSQGSAANDTTPENAANVLQELINRLEEVVPLMDIDPVAPKAPPASKEVVAKLPVITLTDEILANLGKDAECSICRENLVLNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDRAYESWKEREKEAEEERKGAENAIRGGEYMYV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2801g00020 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 289 IPR013083 -
Gabi2801g00020 322 CDD RING-H2_RNF126-like 241 283 - -
Gabi2801g00020 322 ProSiteProfiles Zinc finger RING-type profile. 242 283 IPR001841 -
Gabi2801g00020 322 SMART ring_2 242 282 IPR001841 -
Gabi2801g00020 322 SUPERFAMILY RING/U-box 236 289 - -
Gabi2801g00020 322 Coils Coil 286 313 - -
Gabi2801g00020 322 FunFam E3 ubiquitin-protein ligase RNF181 203 289 - -
Gabi2801g00020 322 Pfam Ring finger domain 241 283 IPR001841 -
Gabi2801g00020 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 138 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2801g00020 Gabi-Chr2801 283809 292290 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2801g00020 17 322 C3H Transcription Factor Family AT5G20910 65.472 4.21e-136 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2801g00020 K16274 - gmx:100800189 534.643