Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2801g00015 ATGGTTTGTGAGATGGAAAGCGACTGTATTGAGGATATTATGGACATTGAAGTCCTCCCTTCAATGTGGCCTGAAGATATTGGAAGTGATGTTGGAAAACAGTTCAATATAGAAAAGCCTGGAATGGACCAAGATATGTTAGAGGAAGTCACAATCTTAGGGGAGCCAACTATAGCTGATTTCCAGCGTTTGATGGAGCTTACAAATTATACAGATAAAGGGTCTTCTCAGTTGGCGTATCTTATGAAACACTGGGAGTATAAGCAAGCCAATGCGGTGCGTCTTCTCAGAGAAGAACTTGACAACCTTAGCAAACAAAGGGAGGAAGTTGAGCTCAGGAAGTTGGAGATACTTGAAGACAATCGGTTTGAGGAGGAAAATTATGGGGGTGATAAACGCCCCGTTTCTATTTTAGATGAAGTTTACTATACATGGCAAGAAGTACAAGTTCCATTAAGGAAAAATGATGTTGTTGTTCAAAACAAGAGAGTTGAAATTGATGCTGAGTATGATACTGTTGTGTACTGGAAACAGCGTGCCCTTCATTTGGAAAGACAGTTGGAGGCAAGTGTCCAGAGAGAGCAGGTGCTTAAGGAAAAGTTGCAGGAAAGTATAAAGGACATTGAAAGGCAATCCTCACCTGTGGAAGAACTCTCCCAGATTCTGAAAAGAGCAGATAATTTCTTACACTTTATACTCCAAAATGCACCAGTTGTTATTGGCCATCAGGACAAAGAGTTACGCTATCGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACGGATGTTGAAATTTTCACAGGATCTGGTGTCAAGGAATCTCAAGATTTTAAGAGAGAAGTAATGGAGAAAGGATTACCTGCAAAAAAGGAAATTACTTTTGAGACAGACTTATTTGGGTCAAAGACATTCTTGATATATGTAGAACCTGTATTTAGCAAGGCAGGGGAGACAATTGGAATAAATTATATGGGAATGGAAATAACAGATCAGGTGAGGAAAAGAGAAAAAATGGCAAAGCTTAGGGAAGATATTGCAGTTCAGAAAGCCAAGGAAACAGAACTTAATAAAACCATTCACATTACAGAGGAGACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCGCTATCTGGTGTTGTTAGCATGGCTGAAATTCTTTCTACCACAAAACTTGATAAGGAGCAAAGACAGCTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAGCTTATAAATGACATTCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCTACCAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACAGCTGCAGCATCACTGCAGAAAATGTTAACCTTAGAAGGAAATGTGGCAGATGATATACCTATTGAGGTCATTGGAGACGTTTTAAGGATTCGGCAGATTCTCACAAATTTAGTCAGCAATGCGGTCAAGTTTACACGTGAAGGAAAAGTTGGTATTAACCTTTACGTTGTTCCAGAACCATCTTTTGCCCAAGCAGAAGAAGGCCATCAAAACAGGATCGCTGACCAGTCAACTATTTTAGCAATTGGGGTGAAGGAAGAGAAACATCTATCAGCACCTCGAAGTAGCAGTGATCAAAATGCTCTTGATGGTAAAAAACACAATGGTCATCCCAGCCAAAATCACACATTTAATGATGAATGTAGATCTTCAGCTAAAAGTGAATGCTCAGTGAATGGAGATATTGAGGAGCAAACTCATTCAACTGAAACAACAGTGTGGATACGTTGTGATGTACATGACACAGGAATTGGAATACCAGAAAAGGCTATACCTACTTTATTTAGAAGGTACATGCAAGTCAGTGCAGACCACGCTCGAAAGTATGGGGGAACAGGGTTAGGACTAGCAATATGCAAACAACTGGTTGAGTTAATGGGTGGTCGTCTAACAGTGTCTAGCAAAGAAAATTGTGGTTCTACTTTCACCTTCATACTTCCATACAAGGTTTCAACAGCTTGTGATAATTCTGATGACCCGGATGAGCTCTCAGATGTGGATGATAACGATGATGATACAACAGAGGGATTCTTCCAATTCCAACCACGCACTTTGGGCTCTCTTTTCTCTTCTAATGGATCTAGCAGGCCCCAGAATATGTTACCAGGCTACAGAAGCTCACATAAGTTTAATGGTTTTTCAGAGAATTCTTACTCATTCCCTTCTGGTAACATCAAATCTATAGGGATAAGTTCAGTTGAGGATGCATCCTCAGTTGTAGTTGATACTCCAGAGATTTCTGAATCAACAAGTTCATCTAGCCACAGACCAGAAACAAAACATGAAAGTTTAGTTAATAGAAGCAAACAGAATCAAGATAATTCACATGCAAGGTTACAGAATGGTAGTGCAGAATCTTCTCAACTTAATGAGGCAAGTAGAGGAATGACTGTAGCAACAAAATCAAGTGAATCCCAGACGAAAACAGACATAACTTCCCAATGTGTTATTAGCAGTAGCACATCATCAGAAGTAACCAAATCCACATTAAAGCCTAAGATTCTTCTTGTTGAAGATAACAAGATCAATGTCATGGTGACACAGTCAATGATGAAGCGGTTAGGTTATAGCATGGATGTTGTGAATAATGGAGCGGAAGCCGTACGTGCAGTTCAGCGCCACAACTATGAACTTATTCTGATGGATGTCTACATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTCGGTCTTATGAGGAAACGGGCACTTGGGATGCTGCAAAAATAGCTGGAATTGAACAAAGTTTACCAGCTTCAGATGAATGTTCTGTACCACCTAAAAAGCGGATCCACATTATAGCGATGACAGCAAACACATTGTCAGAGAGTTCTGAAGAATGCTTTGCAAATGGTATGGACTCGTTTGTGTCAAAACCTGTGACTTTCCAAAAATTGAAAGAGTGTCTTGAACAGTACCTGAGGTGA 3030 0.3987 MVCEMESDCIEDIMDIEVLPSMWPEDIGSDVGKQFNIEKPGMDQDMLEEVTILGEPTIADFQRLMELTNYTDKGSSQLAYLMKHWEYKQANAVRLLREELDNLSKQREEVELRKLEILEDNRFEEENYGGDKRPVSILDEVYYTWQEVQVPLRKNDVVVQNKRVEIDAEYDTVVYWKQRALHLERQLEASVQREQVLKEKLQESIKDIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETDLFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKREKMAKLREDIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDKEQRQLLDVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPIEVIGDVLRIRQILTNLVSNAVKFTREGKVGINLYVVPEPSFAQAEEGHQNRIADQSTILAIGVKEEKHLSAPRSSSDQNALDGKKHNGHPSQNHTFNDECRSSAKSECSVNGDIEEQTHSTETTVWIRCDVHDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKENCGSTFTFILPYKVSTACDNSDDPDELSDVDDNDDDTTEGFFQFQPRTLGSLFSSNGSSRPQNMLPGYRSSHKFNGFSENSYSFPSGNIKSIGISSVEDASSVVVDTPEISESTSSSSHRPETKHESLVNRSKQNQDNSHARLQNGSAESSQLNEASRGMTVATKSSESQTKTDITSQCVISSSTSSEVTKSTLKPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGAEAVRAVQRHNYELILMDVYMPVMNGLQTTKLIRSYEETGTWDAAKIAGIEQSLPASDECSVPPKKRIHIIAMTANTLSESSEECFANGMDSFVSKPVTFQKLKECLEQYLR 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2801g00015 1009 ProSiteProfiles Response regulatory domain profile. 866 1008 IPR001789 GO:0000160
Gabi2801g00015 1009 FunFam Histidine kinase 5 216 351 - -
Gabi2801g00015 1009 Pfam His Kinase A (phospho-acceptor) domain 376 439 IPR003661 GO:0000155|GO:0007165
Gabi2801g00015 1009 SMART HKATPase_4 485 683 IPR003594 -
Gabi2801g00015 1009 Gene3D - 362 439 - -
Gabi2801g00015 1009 Gene3D - 440 687 IPR036890 -
Gabi2801g00015 1009 MobiDBLite consensus disorder prediction 801 851 - -
Gabi2801g00015 1009 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 8 1008 - -
Gabi2801g00015 1009 SMART REC_2 865 1004 IPR001789 GO:0000160
Gabi2801g00015 1009 MobiDBLite consensus disorder prediction 691 707 - -
Gabi2801g00015 1009 Gene3D - 858 1009 - -
Gabi2801g00015 1009 Gene3D PAS domain 213 351 - -
Gabi2801g00015 1009 CDD HATPase_EvgS-ArcB-TorS-like 490 680 - -
Gabi2801g00015 1009 ProSiteProfiles Histidine kinase domain profile. 381 683 IPR005467 -
Gabi2801g00015 1009 CDD REC_hyHK_CKI1_RcsC-like 867 1004 - -
Gabi2801g00015 1009 FunFam Putative histidine kinase 5 362 439 - -
Gabi2801g00015 1009 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 373 439 IPR036097 GO:0000155|GO:0007165
Gabi2801g00015 1009 SMART HisKA_10 374 439 IPR003661 GO:0000155|GO:0007165
Gabi2801g00015 1009 SUPERFAMILY CheY-like 865 1009 IPR011006 -
Gabi2801g00015 1009 CDD HisKA 373 435 IPR003661 GO:0000155|GO:0007165
Gabi2801g00015 1009 MobiDBLite consensus disorder prediction 549 581 - -
Gabi2801g00015 1009 Pfam Response regulator receiver domain 867 934 IPR001789 GO:0000160
Gabi2801g00015 1009 MobiDBLite consensus disorder prediction 775 851 - -
Gabi2801g00015 1009 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 461 680 IPR036890 -
Gabi2801g00015 1009 FunFam Histidine kinase 5 859 1009 - -
Gabi2801g00015 1009 Coils Coil 184 211 - -
Gabi2801g00015 1009 MobiDBLite consensus disorder prediction 690 710 - -
Gabi2801g00015 1009 FunFam Probable histidine kinase 1 561 686 - -
Gabi2801g00015 1009 Coils Coil 93 120 - -
Gabi2801g00015 1009 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 485 681 IPR003594 -
Gabi2801g00015 1009 PRINTS Bacterial sensor protein C-terminal signature 667 680 IPR004358 GO:0016310|GO:0016772
Gabi2801g00015 1009 PRINTS Bacterial sensor protein C-terminal signature 643 661 IPR004358 GO:0016310|GO:0016772
Gabi2801g00015 1009 PRINTS Bacterial sensor protein C-terminal signature 608 622 IPR004358 GO:0016310|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2801g00015 Gabi-Chr2801 214624 221223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2801g00015 1 544 Histidine Kinase Gene Family AT5G10720 69.328 0.0 750
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2801g00015 HATPase_c 7.4e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2801g00015 - - gmx:100796072 1691.4