Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2797g00024 ATGGCAATTGCAGCAACCTCTGCCATCTCTCTTCTTTTCTTTCTTCTTAACCTATGCCTTAAAGGCACTTATGGTGACTATGGAGGTGGATGGCAAGGTGGTCATGCCACATTTTATGGTGGGGGAGATGCATCAGGCACAATGGGAGGGGCATGTGGTTATGGAAATTTGTATAGTCAAGGCTATGGGACTAACACTGCAGCACTAAGCACTGCTCTATTCAACAGTGGCTTGAGTTGTGGTTCTTGCTATGAAATGAAATGTAATGGTGAGCCCAGATGGTGCCTCCCTGGTAGCATAATGGTTACTGCTACAAACTTCTGCCCCCCTAACTATGCATTGTCTAATGACAATGGTGGGTGGTGCAACCCTCCTCTACAGCACTTTGATCTTGCTGAGCCTGCTTTCTTACAAATTGCACAATACAAAGCTGGAATTGTTCCTGTTTCCTTCAGAAGAGTTCCCTGTGTGAAGAAAGGAGGAATCAGGTTCACAATTAATGGCCACTCTTACTTTAACTTGGTTTTGATCACAAATGTTGGTGGAGCTGGAGATGTTCAATCTGTGTCCATCAAGGGTAAAAATGGGTGGCAAAAAATGTCTAGAAACTGGGGCCAGAATTGGCAAAGCAACTCTTACCTCAATGGCCAAAGCCTCTCTTTCCAGGTCACTACAAGTGATGGCAGAACTATGACTAGCAACAATGTTGCTCCTGGTAATTGGCAATTTGGACAGACATTTGAGGGGGGACAGTTTTAG 759 0.448 MAIAATSAISLLFFLLNLCLKGTYGDYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEMKCNGEPRWCLPGSIMVTATNFCPPNYALSNDNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLITNVGGAGDVQSVSIKGKNGWQKMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTMTSNNVAPGNWQFGQTFEGGQF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2797g00024 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 249 IPR007117 -
Gabi2797g00024 252 SUPERFAMILY PHL pollen allergen 158 249 IPR036749 -
Gabi2797g00024 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 161 IPR007112 -
Gabi2797g00024 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Gabi2797g00024 252 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Gabi2797g00024 252 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Gabi2797g00024 252 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Gabi2797g00024 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Gabi2797g00024 252 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Gabi2797g00024 252 Gene3D - 160 252 IPR036749 -
Gabi2797g00024 252 FunFam Expansin 161 252 - -
Gabi2797g00024 252 SUPERFAMILY Barwin-like endoglucanases 12 179 IPR036908 -
Gabi2797g00024 252 CDD DPBB_EXPA_N 35 156 - -
Gabi2797g00024 252 PANTHER EXPANSIN-A15 11 252 IPR002963 GO:0009664
Gabi2797g00024 252 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Gabi2797g00024 252 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Gabi2797g00024 252 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Gabi2797g00024 252 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Gabi2797g00024 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Gabi2797g00024 252 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Gabi2797g00024 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Gabi2797g00024 252 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Gabi2797g00024 252 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Gabi2797g00024 252 FunFam Expansin 20 157 - -
Gabi2797g00024 252 SMART dpbb_1 66 151 IPR007112 -
Gabi2797g00024 252 Pfam Lytic transglycolase 66 151 IPR009009 -
Gabi2797g00024 252 Gene3D - 21 156 IPR036908 -
Gabi2797g00024 252 Pfam Expansin C-terminal domain 162 238 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2797g00024 Gabi-Chr2797 260817 262997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2797g00024 1 252 Expansin Gene Family AT2G40610 80.315 2.40e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2797g00024 K20628 - gmx:100807183 469.544