Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2797g00002 ATGCTTGCATTCTCCACTGCTCCTCTATTCTCAAACATGGGTTGGAACTTAGAGGACGAGCCCTTAAGCAATAACCATAACTATTTCTGTAAAGATACTGAATCACACTCATTTCCCCATCAATTCTCTTCAGCACAGCCACAAGTTGAGGTTGAAAGGTCTACACCATCCCCACACCCTACCATGGTCAAGAAGCTTAATCACAATGCTAGTGAACGTGATCGTCGCAAGAAGATCAAGAACTTGATTTTTTCACTTCGTTCAGTTCTTCCAGTGGCAGAACAAACGAAAAAGATGAGCATTCCGGAAACAATTTCGCGGGTCCTAAAATACATACCTGACTTACAACAGCAAGTTGAAGGACTAACTAAGAAAAAAGAGGAACTTATATCGAGAATTTCTAAACAAGAAGATGCAGTGAACAAAGAATCTCAAAGGAAGATTCCCCATCAGAATTCTGTTTTTGTAGTTTCAACAAGTAGGCTCAATGATTACGAGGCTGCTTTTCAGATCTCCTCTTATGAGGTCCACAAGACTCCACTATCTGAGATCATACTATTTCTAGAAAACAATGGCCTTTTTCTGCTAAATGCTTCTTCTTCTGAAACCTTTGGAGGAAGGGTCTTCTATAACTTGCATTTCCAGTTGGAAAAAACTCAGATTAGAGCCTGA 672 0.4003 MLAFSTAPLFSNMGWNLEDEPLSNNHNYFCKDTESHSFPHQFSSAQPQVEVERSTPSPHPTMVKKLNHNASERDRRKKIKNLIFSLRSVLPVAEQTKKMSIPETISRVLKYIPDLQQQVEGLTKKKEELISRISKQEDAVNKESQRKIPHQNSVFVVSTSRLNDYEAAFQISSYEVHKTPLSEIILFLENNGLFLLNASSSETFGGRVFYNLHFQLEKTQIRA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2797g00002 223 Coils Coil 112 146 - -
Gabi2797g00002 223 MobiDBLite consensus disorder prediction 51 72 - -
Gabi2797g00002 223 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 55 215 - -
Gabi2797g00002 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 115 IPR011598 GO:0046983
Gabi2797g00002 223 SMART finulus 69 121 IPR011598 GO:0046983
Gabi2797g00002 223 Gene3D - 59 147 IPR036638 GO:0046983
Gabi2797g00002 223 Pfam Helix-loop-helix DNA-binding domain 64 116 IPR011598 GO:0046983
Gabi2797g00002 223 FunFam Transcription factor ORG2 59 150 - -
Gabi2797g00002 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 133 IPR036638 GO:0046983
Gabi2797g00002 223 CDD bHLH_AtORG2_like 64 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2797g00002 Gabi-Chr2797 81576 82856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2797g00002 9 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 41.256 6.04e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2797g00002 HLH 9.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2797g00002 - - gmx:100803424 280.796