Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2797g00001 ATGCTTGCAATCTCTACTCCTCCTCTATTCTCAAACATGGGCTGGAACTTAGAGGAGGAGCCCTTAAACCATAAAAAGAAGAACTACTATAAAGATACCGTGTCCTCAGAGTACTCAATTTCCCATAAATTCTCTTCACCACAGCCACGGGTTGAGGTTAAAAACTCTACACCATCATCCACCAAGAAGGTTAACCATAATGCTCGAGAACGTGATCGTCGCAAGAAAATCAATAACTTGATTTTTTCACTTCGTTCACTTCTTCCAGTGTCACATCAAAAGAAAAAAATGAGCATTCCGGAAACAATTTCGCGAGTAATAACATACGTACCTGAGTTACAGCAGCATTTGGAAGGACTAATTAAGAAAAAAGAAGAACTTTTATCGAGAATTTCTCAGGAAAGAGATGCAGTGAATAAAGAATTTAAAAGGAAGATTCCCCATCACAATTCTGCTTTTGTAGTTTCAACAACTAGGCTCAATGACAATGAGGCTGCTATTCAGATTTGCTCTCAAGAGGTCAACAAGACTCCACTATCCGATATCTTGCTGATTTCAGAAAATAATGGTCTTTCTCTGCTAAATGCTTCTTCCTCTGAAACCTTCGGAGGGAGGGTCTTCTATAACTTGCATTTCCAGGTGGACAAAACACAAGCCCACCTACCTATGCTAAGAAATTTCATAAAAGAAAGTGGGGTGATATCTTTTGTTATTTTCATAGGATTTTTTGATGATTTACCCGTGTTTTTCAGACATTGGTATCCCCACTTGATACAGAGTGCTGCAGTGCTAGGATAA 798 0.3885 MLAISTPPLFSNMGWNLEEEPLNHKKKNYYKDTVSSEYSISHKFSSPQPRVEVKNSTPSSTKKVNHNARERDRRKKINNLIFSLRSLLPVSHQKKKMSIPETISRVITYVPELQQHLEGLIKKKEELLSRISQERDAVNKEFKRKIPHHNSAFVVSTTRLNDNEAAIQICSQEVNKTPLSDILLISENNGLSLLNASSSETFGGRVFYNLHFQVDKTQAHLPMLRNFIKESGVISFVIFIGFFDDLPVFFRHWYPHLIQSAAVLG 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2797g00001 265 SMART finulus 67 119 IPR011598 GO:0046983
Gabi2797g00001 265 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 55 217 - -
Gabi2797g00001 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 132 IPR036638 GO:0046983
Gabi2797g00001 265 FunFam Transcription factor ORG2 57 142 - -
Gabi2797g00001 265 Coils Coil 110 141 - -
Gabi2797g00001 265 MobiDBLite consensus disorder prediction 45 63 - -
Gabi2797g00001 265 CDD bHLH_AtORG2_like 62 136 - -
Gabi2797g00001 265 Gene3D - 53 144 IPR036638 GO:0046983
Gabi2797g00001 265 MobiDBLite consensus disorder prediction 45 72 - -
Gabi2797g00001 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 113 IPR011598 GO:0046983
Gabi2797g00001 265 Pfam Helix-loop-helix DNA-binding domain 62 114 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2797g00001 Gabi-Chr2797 57768 60110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2797g00001 1 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 40.598 9.81e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2797g00001 HLH 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2797g00001 - - gmx:100803424 249.98