Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2796g00037 ATGGTGAACAAGAGAAAACCTTCAAGGGAAGTTGAAGGAAGGGAAAAGAACAATGAAGAAGGGAACACTATTGGATGGGAACAGTTAAGGGAAGAAGCAACATCAGTAGCAGCTGCCCTACTTGGAGCTCGAAGATCAAGAAAACGTTACATTGGGGTGCGCCAAAGATCTTCAGGGAGATGGGTGGCTGAGATCAAAGACACCATTCAGAACATTAGACTGTGGTTAGGTACTTATGACACTGCTGAAGATGCTGCTAAAGCTTATGATGAAGCAGCTCGTTTGCTTCGAGGTGCTAACACTCGCACAAATTTCTTTCATTCCCAATCTTCTCATTCTATTTCAGCTCTTCCTCCAAAGATTGCCAAACTCTTACTTTTTAGGCTCAAAGCTAGTAACATTGCCTCTTCTTGTATGGTTACTACTACTTTTCCTACTAACCACTATGATCAAGAAACCATACCAGAACCAGAACCAAGACCCCATTTTTTTCACCAAATAGAAGAACCCAACTTCGAAAATTTTCTAGACATTGCAGGAAATGGGACTGTTGCAGCAAGTTATGATGATGGTGCTAGTTATGGTTCTTCTGACACTACTATTTATGACTATAGTGGAACCAATGGAGAAAAGTTTAACCAAGAGGGTTGTGGAGAGGATTTTACACTGGAGTATCATTGTGCTAACAATGTTGATGATGGAAACAATCAGATCGTGAGGCGTAAAGGAGAATTTGTAGACTATGATGTTGGGCTCAATGAGTTTAAGTTTCTGGATAGTGTTGGATCATTGAGTTACTCTTCTTCTCCATTTGAGATAGCAGAGGAGATGGCGGGGTTAATGGAGGAAGAAAAATGTGATGTGGATGATTCTCTGTTACTTAGAGAAACTCTTAGGATGAAGTATGAACGTAAAATCTCATCTTGTCTTTACACCTTAATTGGGGTGTCTGAGTGTTTGAGGCTGCAAGTTGAACCAGAAAATGGAAAGGAAATGGAAAAATTTTCAGGATGGGAACTGTGA 1023 0.4047 MVNKRKPSREVEGREKNNEEGNTIGWEQLREEATSVAAALLGARRSRKRYIGVRQRSSGRWVAEIKDTIQNIRLWLGTYDTAEDAAKAYDEAARLLRGANTRTNFFHSQSSHSISALPPKIAKLLLFRLKASNIASSCMVTTTFPTNHYDQETIPEPEPRPHFFHQIEEPNFENFLDIAGNGTVAASYDDGASYGSSDTTIYDYSGTNGEKFNQEGCGEDFTLEYHCANNVDDGNNQIVRRKGEFVDYDVGLNEFKFLDSVGSLSYSSSPFEIAEEMAGLMEEEKCDVDDSLLLRETLRMKYERKISSCLYTLIGVSECLRLQVEPENGKEMEKFSGWEL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2796g00037 340 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Gabi2796g00037 340 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 194 - -
Gabi2796g00037 340 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2796g00037 340 FunFam ethylene-responsive transcription factor RAP2-11 48 107 - -
Gabi2796g00037 340 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Gabi2796g00037 340 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Gabi2796g00037 340 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Gabi2796g00037 340 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Gabi2796g00037 340 CDD AP2 48 105 IPR001471 GO:0003700|GO:0006355
Gabi2796g00037 340 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Gabi2796g00037 340 MobiDBLite consensus disorder prediction 1 25 - -
Gabi2796g00037 340 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2796g00037 Gabi-Chr2796 365862 366884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2796g00037 43 125 AP2-EREBP Transcription Factor Family AT5G19790 59.036 1.24e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2796g00037 AP2 4.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2796g00037 K09286 - gmx:100793940 355.91