Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2796g00010 ATGGAGGAGAGGAAGTTTGTGTGCAAGTATTGTAGCAAGAGGTTTCCTTGTGGGAAGTCTCTGGGTGGTCACATCAGGACTCATATGAGTGAAGAAAGAAGTAATGTTGATTGTGATATGCTCAAGTTGGATGGTGGAAGGAAGAGGAATAAGAGAGATTTATGGTCTGAAGATGGTGGTGGGAACTCCATTTATGGCCTCAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATCGTACAACATTGGAACATGAAGAGAAGTTCTGCAAAGAATGTGGGAAAGGTTTCCCATCATTGAAAGCTCTCTGTGGTCACATGGCTTGTCATTCAGAGAAAGAAAAGGGAAACAACAAGTTTGAAGAGAGTGAGAAGCAGAAATTGGTTATGGATAGTCAATCTGATACTGAGACTTGTGCTCCAACACATCCAAGGAAATCCAAGAGAACCAGGTTCAAGACCCTTGCCCTTGCCAATCACCCTTCTTCTTCTTCTTCTTCTGTTGTTCCTTTGGCCAATGGTTCTGGTTCTTCACCTGTGTCAGAGGTTGAACAGGAGCAAGAGGAGGTGGCTAGGTGTTTGATGATGTTGTCCAAAGATTCTAGCCACAGGGGTCGTTTTGCTACTGTTACTGAGTCTTCTGATAACAACTCGTTTGTTCTAGAGGCAAAATCACCCTCTCTTGATACGAGGGTTGCTGTGAGTAATGGTAACAACTTTTTGTTTAATGCTTATGAGCTTGTGGAGAAGAAGCTGGTCAAGGACATGAAGTTGAAATCTGCTGAGATTGGTGCTTGTGATAATTCAGATTCTAGATATTTCAGATATGGTCCCAAAACTAAAATGTTAGACTCAGACGTTACAAGTGATAAATTCAAGGGGGTGAAGGTGGGAGAAAAGTCTCGGATAGAGGATTATGATGTTGAATCGAGGAAAATACTTAGCAGAGGCAGAAGCAAATCCACTGCAACTGTGTTTAAGAAATTAGTGATGGAGGATTCTAGCAAGTCGACATCAAATGGTTTTACCAATGATGAAATCTATGAGAATGGTAGGAAAAGTTGGAAGTATGATTGTTCGGCAGGTGAAAGGGACAATAGCTCTCATGATTCAACCGATGCGAGTGATGAAAACAGTTCAGATACTGATTCTTTTTCTGCTCCCAACTCTCGTAAGAATAAGGCTCTCAATGGAAAGAAATCCAGCAATAAGGCCAAGAAGAAGTTGAAGTCAAAGAAAAGCAAGGAACATGAGTGCCCAATCTGCTACAAAACTTTCAGGTCAGGCCAAGCCTTAGGAGGTCATAAAAGATCCCATTTCATTGGAGGTTCTGAAGAAAACACCAAGGTGATCAAACAAGGTGCTCCTGCTGTTCCTTGTCTGATTGATCTCAATCTACCTGCTCCTGTTGATGAATAA 1419 0.4193 MEERKFVCKYCSKRFPCGKSLGGHIRTHMSEERSNVDCDMLKLDGGRKRNKRDLWSEDGGGNSIYGLRENPKKTMRFVHRTTLEHEEKFCKECGKGFPSLKALCGHMACHSEKEKGNNKFEESEKQKLVMDSQSDTETCAPTHPRKSKRTRFKTLALANHPSSSSSSVVPLANGSGSSPVSEVEQEQEEVARCLMMLSKDSSHRGRFATVTESSDNNSFVLEAKSPSLDTRVAVSNGNNFLFNAYELVEKKLVKDMKLKSAEIGACDNSDSRYFRYGPKTKMLDSDVTSDKFKGVKVGEKSRIEDYDVESRKILSRGRSKSTATVFKKLVMEDSSKSTSNGFTNDEIYENGRKSWKYDCSAGERDNSSHDSTDASDENSSDTDSFSAPNSRKNKALNGKKSSNKAKKKLKSKKSKEHECPICYKTFRSGQALGGHKRSHFIGGSEENTKVIKQGAPAVPCLIDLNLPAPVDE 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2796g00010 472 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Gabi2796g00010 472 Pfam C2H2-type zinc finger 90 112 - -
Gabi2796g00010 472 Pfam C2H2-type zinc finger 6 31 - -
Gabi2796g00010 472 Pfam C2H2-type zinc finger 417 439 - -
Gabi2796g00010 472 SMART c2h2final6 417 439 IPR013087 -
Gabi2796g00010 472 SMART c2h2final6 6 28 IPR013087 -
Gabi2796g00010 472 SMART c2h2final6 88 110 IPR013087 -
Gabi2796g00010 472 Gene3D Classic Zinc Finger 1 56 - -
Gabi2796g00010 472 MobiDBLite consensus disorder prediction 378 396 - -
Gabi2796g00010 472 MobiDBLite consensus disorder prediction 114 131 - -
Gabi2796g00010 472 ProSitePatterns Zinc finger C2H2 type domain signature. 419 439 IPR013087 -
Gabi2796g00010 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Gabi2796g00010 472 MobiDBLite consensus disorder prediction 114 180 - -
Gabi2796g00010 472 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 472 - -
Gabi2796g00010 472 MobiDBLite consensus disorder prediction 397 413 - -
Gabi2796g00010 472 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Gabi2796g00010 472 MobiDBLite consensus disorder prediction 359 376 - -
Gabi2796g00010 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Gabi2796g00010 472 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Gabi2796g00010 472 SUPERFAMILY beta-beta-alpha zinc fingers 89 439 IPR036236 -
Gabi2796g00010 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 417 439 IPR013087 -
Gabi2796g00010 472 MobiDBLite consensus disorder prediction 359 413 - -
Gabi2796g00010 472 MobiDBLite consensus disorder prediction 156 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2796g00010 Gabi-Chr2796 109198 110709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2796g00010 1 472 C2H2 Transcription Factor Family AT1G26610 42.969 2.85e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2796g00010 zf-C2H2_6 3.3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2796g00010 - - vun:114177115 527.324