Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2794g00052 ATGGAAGGCTCTGTCAATGAACGTCTTGATTTTGGGAAGATGGGATATGGGTGCAAGCATTATAGGAGAAGATGTAGGATTCGTGCTCCCTGTTGCGTTGAGATCTACTCATGCCGTCATTGTCATAACGAGGCAGCGGTATTTCGTAGCATGTTGAGGAATCCCTTTGATCGCCACGAACTCGTTCGCCAAGATGTTAAACAAATTGTTTGTTCAGTTTGTGACACTGAGCAGCCAGTTGCACAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACATCTGCAAATTCTTCGATGATGATACAGGGAAACAACAGTTTCATTGTGATGATTGCGGGATCTGCAGGGTTGGTGGGCGAGAGAATTTTTTCCACTGCAACAAGTGCGGGTCTTGCTATTCAGTTAGTCTCCGCGATAATCATTTATGTGTCGAGAACTCCATGAGGCATCACTGTCCCATTTGTTATGAGTACCTTTTTGACTCGTTGAAAGACACTGTTGTTATGCAATGCGGTCACACAATGCACTGTGAATGTTACCATGAGATGATAAAACATAACAAGTTCTGTTGTCCCATATGCTCCAAGTCGGTGACTGACATGTCTAGGACTTGGAAGAGAATTGATGAAGAGATTGAAGCAACGGTCATGCCTGAAGATTATCGGTACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACCGAAGTTTACTTCCACATTCTTGGGCAAAAATGCGGTCACTGCAGTTCATATAATACCCGGGCAATTGCACCTCCAGTTCTTCCTCAATGA 813 0.4367 MEGSVNERLDFGKMGYGCKHYRRRCRIRAPCCVEIYSCRHCHNEAAVFRSMLRNPFDRHELVRQDVKQIVCSVCDTEQPVAQVCTNCGVKMGEYFCNICKFFDDDTGKQQFHCDDCGICRVGGRENFFHCNKCGSCYSVSLRDNHLCVENSMRHHCPICYEYLFDSLKDTVVMQCGHTMHCECYHEMIKHNKFCCPICSKSVTDMSRTWKRIDEEIEATVMPEDYRYRKVWILCNDCNDTTEVYFHILGQKCGHCSSYNTRAIAPPVLPQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2794g00052 270 ProSiteProfiles Zinc finger RING-type profile. 156 199 IPR001841 -
Gabi2794g00052 270 Gene3D - 229 265 - -
Gabi2794g00052 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 228 IPR013083 -
Gabi2794g00052 270 ProSiteProfiles Zinc finger CTCHY-type profile. 91 155 IPR017921 -
Gabi2794g00052 270 Pfam Zinc finger, C3HC4 type (RING finger) 156 198 IPR018957 GO:0046872
Gabi2794g00052 270 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 266 - -
Gabi2794g00052 270 ProSiteProfiles Zinc finger CHY-type profile. 11 89 IPR008913 GO:0008270
Gabi2794g00052 270 Pfam Zinc-ribbon 204 261 IPR039512 -
Gabi2794g00052 270 Pfam CHY zinc finger 18 101 IPR008913 GO:0008270
Gabi2794g00052 270 SUPERFAMILY Zinc hairpin stack 92 149 IPR037275 -
Gabi2794g00052 270 FunFam RING finger and CHY zinc finger domain-containing protein 1 227 269 - -
Gabi2794g00052 270 SUPERFAMILY CHY zinc finger-like 15 90 IPR037274 GO:0008270
Gabi2794g00052 270 SMART ring_2 156 198 IPR001841 -
Gabi2794g00052 270 SUPERFAMILY RING/U-box 155 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2794g00052 Gabi-Chr2794 361417 364929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2794g00052 2 269 C2H2 Transcription Factor Family AT3G18290 37.589 1.16e-53 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2794g00052 K10144 - gmx:100792038 549.28