Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2794g00030 ATGGGAAGGTATAGAAGCCGGAGCAGAAGCTACAGCCCTAGGCGGCGTAGCAGAAGCCCTCCGCCGCGCGGACGCAAGCGCTACGTTGATGATCGCCACGGTGATAGCAGGTCCTACAGAGACCGGCGCTCCCCTCTTCCTTCTGGCTTGCTTGTTCGTAATCTCCCCCTTGATGCTAGGCCTGAAGATCTTAGGATCCCATTCGAGCGCTATGGTCCTGTGAAAGATGTTTATCTTCCTAAAAATTACTACACTGGTGAGCCTCGGGGCTTTGGATTTGTGAAATATCGATATGGTGAAGATGCAGCTGAGGCAAAGCATCATCTTAATCACACTATCATTGGTGGACGTGAAATAAGAATTGTGTTTGCTGAGGAAAATAGGAAAACTCCTCAAGAGATGCGTTTTACTTCTCGTGGAAGTGATCGGCATGGAGGTGGTAGAAGGAGGACTCATACAAGATCCCCAAGACGACGATATGATTCCTACTCTCAGTCTCCATCACCAGCTAGGGATGATTCAAGGAATGGCAGGGGTAGGGATGATTATTATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCTCTCTCTCCTAGTGGTGGGAAGGACTACAGGGGGTCCCCACGTCCCAGGGAGAATGGTCGGAGTCCTAATGACAAAAAGGATCGGACACCTAGCAGCAGATCAGAAAGTCCCAGGGGTAATGATCGCAGCCTTTCAAGGTCTAGTTCACGGTCATACAGTCCCCGTTGA 753 0.4993 MGRYRSRSRSYSPRRRSRSPPPRGRKRYVDDRHGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKHHLNHTIIGGREIRIVFAEENRKTPQEMRFTSRGSDRHGGGRRRTHTRSPRRRYDSYSQSPSPARDDSRNGRGRDDYYSPERSRSYSRSLSPSGGKDYRGSPRPRENGRSPNDKKDRTPSSRSESPRGNDRSLSRSSSRSYSPR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2794g00030 250 MobiDBLite consensus disorder prediction 1 47 - -
Gabi2794g00030 250 MobiDBLite consensus disorder prediction 1 22 - -
Gabi2794g00030 250 SUPERFAMILY RNA-binding domain, RBD 50 153 IPR035979 GO:0003676
Gabi2794g00030 250 Gene3D - 3 138 IPR012677 -
Gabi2794g00030 250 MobiDBLite consensus disorder prediction 125 144 - -
Gabi2794g00030 250 SMART rrm1_1 49 122 IPR000504 GO:0003723
Gabi2794g00030 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Gabi2794g00030 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 120 IPR000504 GO:0003723
Gabi2794g00030 250 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 49 241 - -
Gabi2794g00030 250 MobiDBLite consensus disorder prediction 23 42 - -
Gabi2794g00030 250 MobiDBLite consensus disorder prediction 125 250 - -
Gabi2794g00030 250 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 140 - -
Gabi2794g00030 250 MobiDBLite consensus disorder prediction 231 250 - -
Gabi2794g00030 250 MobiDBLite consensus disorder prediction 173 188 - -
Gabi2794g00030 250 MobiDBLite consensus disorder prediction 205 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2794g00030 Gabi-Chr2794 183589 187642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2794g00030 52 110 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.58e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2794g00030 K12900 - gmx:100788749 355.525