Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2794g00004 ATGGCTTCCCCCGTACACTCCACCCCTCCCACAGATCCACCCTCTGCCGTGCCCCTCGCACTCTCTGTCCCACTCCCAGTCCCACCCTCCTCTCGCCGCCTTCCTCCGCCGTGTTGGTCCCCTGACGAGACCCTCGCTCTCATCGACGCTTACCGCGACAAGTGGTACTCTCTTGGCCGTGGAAACCTCAAGGCCACCCACTGGCAAGAGGTAGCCGACGCTGTCTCCCAGCGTTGCCCCAATGCCTCGCCGCCCAAAACCCCCGTCCAGTGCCGCCACAAGATGGAGAAGCTACGCAAGCGCTACCGCACCGAGATCCAACGCGCTCGCTCCCTCCCTGTCTCTCGTTTCAACTCCTCTTGGGTCCACTTCAAGCTCATGGATTCCATGGAGAAAGGTCCCTCCCCTGTCAAACAAGAGAACGATTCCGATAATAGCCATGACGGAGATGCCGTTGACGACGACGGCGACGATGACGATGATCAAGATCTGTACGAGGAAATCAAGAACGGCCATGGATCTAACACGAGGAGCTTGAACAAATTGTATAGGAACGGGCTTGTTGGTTCTGGTGGCGGTGGCGGTGGGTTTAGGATTAGAATTCCGACTGGGTTGAACGTGGCGCAACCCGGGTCCAAGTTATTTGGGAAGGTTGGTGGTAATCAGAAATTCAACCCCAATTTGAATCACAACCCTAGCTCCAAGGTGTTGGGGAAGAAGAGGGAGAGGGACCCTGTAGGAGAGGTTGTGTCTGCGATTAAGGTTTTGGGAGATGGGTTCGTGAGAATGGAGCAGATGAAGATGGAGATGGCGAGGGAGATTGAGACCATGCGGATGGAGATGGAAATGAAGCGCACTGAGATGATTCTCGAGTCCCAACAGCGAATTGTCGAGGCCTTTGCCAAGGCCGTTTCTGAAAAGAAGAAGAAGCCAAAGAGAATACCATCGCCCCAACAACCTTAA 963 0.5524 MASPVHSTPPTDPPSAVPLALSVPLPVPPSSRRLPPPCWSPDETLALIDAYRDKWYSLGRGNLKATHWQEVADAVSQRCPNASPPKTPVQCRHKMEKLRKRYRTEIQRARSLPVSRFNSSWVHFKLMDSMEKGPSPVKQENDSDNSHDGDAVDDDGDDDDDQDLYEEIKNGHGSNTRSLNKLYRNGLVGSGGGGGGFRIRIPTGLNVAQPGSKLFGKVGGNQKFNPNLNHNPSSKVLGKKRERDPVGEVVSAIKVLGDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSEKKKKPKRIPSPQQP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2794g00004 320 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 29 306 IPR044823 -
Gabi2794g00004 320 FunFam Trihelix transcription factor ASIL2 39 104 - -
Gabi2794g00004 320 Pfam Myb/SANT-like DNA-binding domain 37 130 IPR044822 -
Gabi2794g00004 320 MobiDBLite consensus disorder prediction 147 164 - -
Gabi2794g00004 320 MobiDBLite consensus disorder prediction 1 36 - -
Gabi2794g00004 320 SMART 118neu2 46 135 IPR006578 -
Gabi2794g00004 320 Coils Coil 92 112 - -
Gabi2794g00004 320 ProSiteProfiles Myb-like domain profile. 39 99 IPR001005 -
Gabi2794g00004 320 Gene3D - 39 104 - -
Gabi2794g00004 320 MobiDBLite consensus disorder prediction 220 242 - -
Gabi2794g00004 320 MobiDBLite consensus disorder prediction 7 36 - -
Gabi2794g00004 320 MobiDBLite consensus disorder prediction 131 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2794g00004 Gabi-Chr2794 20112 25111 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2794g00004 38 130 Trihelix Transcription Factor Family AT3G14180 38.710 1.30e-16 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi2794g00004 Myb_DNA-bind_4 2.6e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2794g00004 - - vun:114179736 415.616